rs1765738

Homo sapiens
C>G
NALCN-AS1 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0060 (1823/29982,GnomAD)
G=0052 (1527/29118,TOPMED)
G=0092 (463/5008,1000G)
G=0043 (165/3854,ALSPAC)
G=0053 (196/3708,TWINSUK)
chr13:100730836 (GRCh38.p7) (13q32.3)
AD
GWASdb2
1   publication(s)
See rs on genome
35 Enhancers around
18 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.100730836C>G
GRCh37.p13 chr 13NC_000013.10:g.101383090C>G

Gene: NALCN-AS1, NALCN antisense RNA 1(plus strand)

Molecule type Change Amino acid[Codon] SO Term
NALCN-AS1 transcriptNR_047687.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.947G=0.053
1000GenomesAmericanSub694C=0.970G=0.030
1000GenomesEast AsianSub1008C=0.776G=0.224
1000GenomesEuropeSub1006C=0.958G=0.042
1000GenomesGlobalStudy-wide5008C=0.908G=0.092
1000GenomesSouth AsianSub978C=0.890G=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.957G=0.043
The Genome Aggregation DatabaseAfricanSub8730C=0.940G=0.060
The Genome Aggregation DatabaseAmericanSub836C=0.960G=0.040
The Genome Aggregation DatabaseEast AsianSub1614C=0.760G=0.240
The Genome Aggregation DatabaseEuropeSub18500C=0.953G=0.046
The Genome Aggregation DatabaseGlobalStudy-wide29982C=0.939G=0.060
The Genome Aggregation DatabaseOtherSub302C=0.920G=0.080
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.947G=0.052
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.947G=0.053
PMID Title Author Journal

P-Value

SNP ID p-value Traits Study
rs17657385.06E-05alcohol consumptionpha001399

eQTL of rs1765738 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1765738 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13101369750101370050E067-13040
chr13101374719101374862E067-8228
chr13101374875101375177E067-7913
chr13101405641101405753E06722551
chr13101369750101370050E069-13040
chr13101370466101370591E069-12499
chr13101374242101374564E069-8526
chr13101374719101374862E069-8228
chr13101374875101375177E069-7913
chr13101399398101399448E07016308
chr13101403370101403423E07020280
chr13101403428101403567E07020338
chr13101369750101370050E071-13040
chr13101374719101374862E071-8228
chr13101374875101375177E071-7913
chr13101403370101403423E07120280
chr13101403428101403567E07120338
chr13101369750101370050E072-13040
chr13101374875101375177E072-7913
chr13101405641101405753E07222551
chr13101369750101370050E074-13040
chr13101426788101426882E07443698
chr13101426990101427050E07443900
chr13101399704101399844E08116614
chr13101399963101400035E08116873
chr13101416696101416952E08133606
chr13101416991101417298E08133901
chr13101417354101417532E08134264
chr13101418008101418059E08134918
chr13101399704101399844E08216614
chr13101399963101400035E08216873
chr13101405641101405753E08222551
chr13101405759101405867E08222669
chr13101416696101416952E08233606
chr13101416991101417298E08233901








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr13101403942101404098E06720852
chr13101404219101404341E06721129
chr13101404436101404567E06721346
chr13101403942101404098E06820852
chr13101404219101404341E06821129
chr13101403942101404098E06920852
chr13101404219101404341E06921129
chr13101403942101404098E07120852
chr13101404219101404341E07121129
chr13101404436101404567E07121346
chr13101403942101404098E07220852
chr13101404219101404341E07221129
chr13101404436101404567E07221346
chr13101403942101404098E07320852
chr13101404219101404341E07321129
chr13101404436101404567E07321346
chr13101403942101404098E07420852
chr13101404219101404341E07421129