SNP Detail Info-rs17685787

Molecule type	Change	Amino acid[Codon]	SO Term
ATP8A2 transcript variant 2	NM_001313741.1:c.	N/A	Intron Variant
ATP8A2 transcript variant 1	NM_016529.5:c.	N/A	Intron Variant
ATP8A2 transcript variant X2	XM_005266419.1:c.	N/A	Intron Variant
ATP8A2 transcript variant X1	XM_011535103.1:c.	N/A	Intron Variant
ATP8A2 transcript variant X3	XM_011535104.2:c.	N/A	Intron Variant
ATP8A2 transcript variant X4	XM_011535106.1:c.	N/A	Intron Variant
ATP8A2 transcript variant X5	XM_011535107.2:c.	N/A	Intron Variant
ATP8A2 transcript variant X6	XM_011535109.2:c.	N/A	Intron Variant
ATP8A2 transcript variant X7	XM_011535112.1:c.	N/A	Intron Variant
ATP8A2 transcript variant X8	XM_011535113.2:c.	N/A	Intron Variant
ATP8A2 transcript variant X9	XM_017020625.1:c.	N/A	Genic Downstream Transcript Variant
ATP8A2 transcript variant X10	XM_017020626.1:c.	N/A	Genic Downstream Transcript Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.905	G=0.095
1000Genomes	American	Sub	694	A=0.940	G=0.060
1000Genomes	East Asian	Sub	1008	A=0.758	G=0.242
1000Genomes	Europe	Sub	1006	A=0.899	G=0.101
1000Genomes	Global	Study-wide	5008	A=0.886	G=0.114
1000Genomes	South Asian	Sub	978	A=0.940	G=0.060
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.889	G=0.111
The Genome Aggregation Database	African	Sub	8710	A=0.912	G=0.088
The Genome Aggregation Database	American	Sub	838	A=0.920	G=0.080
The Genome Aggregation Database	East Asian	Sub	1594	A=0.745	G=0.255
The Genome Aggregation Database	Europe	Sub	18446	A=0.888	G=0.111
The Genome Aggregation Database	Global	Study-wide	29888	A=0.889	G=0.110
The Genome Aggregation Database	Other	Sub	300	A=0.970	G=0.030
Trans-Omics for Precision Medicine	Global	Study-wide	29116	A=0.889	G=0.110
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.884	G=0.116

PMID	Title	Author	Journal
21314694	Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.	Kendler KS	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17685787	0.000725	alcohol dependence	21314694

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr13	26265910	26266066	E070	3730
chr13	26266129	26266755	E070	3949
chr13	26281791	26281855	E070	19611
chr13	26281949	26282160	E070	19769
chr13	26282209	26282300	E070	20029
chr13	26301039	26301102	E070	38859
chr13	26301231	26301281	E070	39051
chr13	26301296	26301362	E070	39116
chr13	26301479	26301758	E070	39299
chr13	26311586	26311636	E070	49406
chr13	26261399	26262359	E073	0
chr13	26233236	26233564	E081	-28616
chr13	26233573	26233805	E081	-28375
chr13	26261399	26262359	E081	0
chr13	26262584	26262656	E081	404
chr13	26262661	26263075	E081	481
chr13	26281949	26282160	E081	19769
chr13	26282209	26282300	E081	20029
chr13	26305778	26306350	E081	43598
chr13	26265910	26266066	E082	3730
chr13	26266129	26266755	E082	3949
chr13	26305597	26305667	E082	43417
chr13	26305778	26306350	E082	43598

rs17685787