SNP Detail Info-rs17685936

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0217 (6489/29906,GnomAD)
G=0191 (5572/29118,TOPMED)
G=0217 (1088/5008,1000G)
G=0268 (1033/3854,ALSPAC)
G=0259 (959/3708,TWINSUK)

Position: chr19:29155013 (GRCh38.p7) (19q12)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 22 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 19	NC_000019.10:g.29155013A>G
GRCh37.p13 chr 19	NC_000019.9:g.29645920A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.891	G=0.109
1000Genomes	American	Sub	694	A=0.590	G=0.410
1000Genomes	East Asian	Sub	1008	A=0.783	G=0.217
1000Genomes	Europe	Sub	1006	A=0.777	G=0.223
1000Genomes	Global	Study-wide	5008	A=0.783	G=0.217
1000Genomes	South Asian	Sub	978	A=0.780	G=0.220
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.732	G=0.268
The Genome Aggregation Database	African	Sub	8710	A=0.890	G=0.110
The Genome Aggregation Database	American	Sub	834	A=0.640	G=0.360
The Genome Aggregation Database	East Asian	Sub	1594	A=0.761	G=0.239
The Genome Aggregation Database	Europe	Sub	18466	A=0.742	G=0.258
The Genome Aggregation Database	Global	Study-wide	29906	A=0.783	G=0.217
The Genome Aggregation Database	Other	Sub	302	A=0.720	G=0.280
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.808	G=0.191
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.741	G=0.259

PMID	Title	Author	Journal
23953852	Genome-wide association studies of maximum number of drinks.	Pan Y	J Psychiatr Res

SNP ID	p-value	Traits	Study
rs17685936	8.74E-05	alcohol consumption	23953852

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	29610590	29610811	E070	-35109
chr19	29611065	29611763	E070	-34157
chr19	29612113	29612157	E070	-33763
chr19	29602259	29602309	E081	-43611
chr19	29602582	29602703	E081	-43217
chr19	29622232	29622710	E081	-23210
chr19	29622777	29622863	E081	-23057
chr19	29623041	29623137	E081	-22783
chr19	29623294	29623344	E081	-22576
chr19	29676469	29676533	E081	30549
chr19	29676631	29676693	E081	30711
chr19	29677747	29677811	E081	31827
chr19	29677943	29678176	E081	32023
chr19	29678244	29678320	E081	32324
chr19	29678425	29678623	E081	32505
chr19	29678687	29678863	E081	32767
chr19	29678894	29678972	E081	32974
chr19	29679286	29680427	E081	33366
chr19	29680767	29680807	E081	34847
chr19	29687232	29687562	E081	41312
chr19	29679286	29680427	E082	33366
chr19	29681497	29681547	E082	35577

rs17685936