SNP Detail Info-rs17703610

Variant Details Frequency Publications p-values eSNP meSNP

Genomic Coordinates

Sequence Name	Change(s)
GRCh38.p7 chr 19	NC_000019.10:g.31980617A>C
GRCh37.p13 chr 19	NC_000019.9:g.32471523A>C

Gene: LOC105372363, uncharacterized LOC105372363(minus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LINC01837 transcript variant X1	XR_001753904.1:n.	N/A	Intron Variant
LINC01837 transcript variant X2	XR_001753905.1:n.	N/A	Intron Variant
LINC01837 transcript variant X3	XR_001753906.1:n.	N/A	Intron Variant
LINC01837 transcript variant X4	XR_001753907.1:n.	N/A	Intron Variant
LINC01837 transcript variant X5	XR_001753908.1:n.	N/A	Intron Variant
LINC01837 transcript variant X6	XR_001753909.1:n.	N/A	Intron Variant
LINC01837 transcript variant X7	XR_001753910.1:n.	N/A	Intron Variant
LINC01837 transcript variant X8	XR_001753911.1:n.	N/A	Intron Variant
LINC01837 transcript variant X9	XR_001753912.1:n.	N/A	Intron Variant
LINC01837 transcript variant X10	XR_001753913.1:n.	N/A	Intron Variant
LINC01837 transcript variant X11	XR_001753914.1:n.	N/A	Intron Variant
LINC01837 transcript variant X12	XR_001753915.1:n.	N/A	Intron Variant
LINC01837 transcript variant X13	XR_001753916.1:n.	N/A	Intron Variant
LINC01837 transcript variant X15	XR_001753917.1:n.	N/A	Intron Variant
LINC01837 transcript variant X16	XR_001753918.1:n.	N/A	Intron Variant
LINC01837 transcript variant X17	XR_001753919.1:n.	N/A	Intron Variant
LINC01837 transcript variant X18	XR_001753920.1:n.	N/A	Intron Variant
LINC01837 transcript variant X20	XR_001753921.1:n.	N/A	Intron Variant
LINC01837 transcript variant X14	XR_001753922.1:n.	N/A	Intron Variant
LINC01837 transcript variant X19	XR_001753923.1:n.	N/A	Intron Variant
LINC01837 transcript variant X21	XR_001753924.1:n.	N/A	Intron Variant
LINC01837 transcript variant X22	XR_001753925.1:n.	N/A	Genic Upstream Transcript Variant

Gene: LOC105372364, uncharacterized LOC105372364(plus strand)

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105372364 transcript variant X2	XR_935910.2:n.	N/A	Intron Variant
LOC105372364 transcript variant X3	XR_935911.2:n.	N/A	Intron Variant
LOC105372364 transcript variant X1	XR_935909.1:n.	N/A	Genic Upstream Transcript Variant

Population Frequency

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.765	C=0.235
1000Genomes	American	Sub	694	A=0.900	C=0.100
1000Genomes	East Asian	Sub	1008	A=0.958	C=0.042
1000Genomes	Europe	Sub	1006	A=0.916	C=0.084
1000Genomes	Global	Study-wide	5008	A=0.883	C=0.117
1000Genomes	South Asian	Sub	978	A=0.920	C=0.080
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.899	C=0.101
The Genome Aggregation Database	African	Sub	8726	A=0.797	C=0.203
The Genome Aggregation Database	American	Sub	838	A=0.880	C=0.120
The Genome Aggregation Database	East Asian	Sub	1622	A=0.971	C=0.029
The Genome Aggregation Database	Europe	Sub	18496	A=0.908	C=0.091
The Genome Aggregation Database	Global	Study-wide	29984	A=0.877	C=0.122
The Genome Aggregation Database	Other	Sub	302	A=0.830	C=0.170
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.862	C=0.137
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.891	C=0.109

PMID	Title	Author	Journal
21956439	Genome-wide association study of alcohol dependence implicates KIAA0040 on chromosome 1q.	Zuo L	Neuropsychopharmacology

P-Value

SNP ID	p-value	Traits	Study
rs17703610	5E-06	alcohol dependence	21956439

eQTL of rs17703610 in Brain tissues (GTEx Analysis Release V7)

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

meQTL of rs17703610 in Fetal Brain

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Enhancer Annotation (GRCh37.p13)

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr19	32453204	32454229	E068	-17294
chr19	32452218	32452755	E070	-18768
chr19	32452765	32452895	E070	-18628
chr19	32452927	32452971	E070	-18552
chr19	32452973	32453134	E070	-18389
chr19	32453204	32454229	E070	-17294
chr19	32454756	32455205	E070	-16318
chr19	32503450	32503490	E070	31927
chr19	32503503	32503557	E070	31980
chr19	32504252	32504359	E070	32729
chr19	32452218	32452755	E081	-18768
chr19	32452765	32452895	E081	-18628
chr19	32452927	32452971	E081	-18552
chr19	32452973	32453134	E081	-18389
chr19	32453204	32454229	E081	-17294
chr19	32459829	32460335	E081	-11188
chr19	32460889	32461476	E081	-10047
chr19	32452765	32452895	E082	-18628
chr19	32452927	32452971	E082	-18552
chr19	32452973	32453134	E082	-18389
chr19	32453204	32454229	E082	-17294

rs17703610

Genomic Coordinates

Gene: LOC105372363, uncharacterized LOC105372363(minus strand)

Gene: LOC105372364, uncharacterized LOC105372364(plus strand)

Population Frequency

P-Value

eQTL of rs17703610 in Brain tissues (GTEx Analysis Release V7)

meQTL of rs17703610 in Fetal Brain

Genomic View

Chromatin Interaction

Enhancer Annotation (GRCh37.p13)