Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 11 | NC_000011.10:g.109110090C>G |
GRCh37.p13 chr 11 | NC_000011.9:g.108980817C>G |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | C=0.996 | G=0.004 |
1000Genomes | American | Sub | 694 | C=0.940 | G=0.060 |
1000Genomes | East Asian | Sub | 1008 | C=0.976 | G=0.024 |
1000Genomes | Europe | Sub | 1006 | C=0.957 | G=0.043 |
1000Genomes | Global | Study-wide | 5008 | C=0.956 | G=0.044 |
1000Genomes | South Asian | Sub | 978 | C=0.890 | G=0.110 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | C=0.955 | G=0.045 |
The Genome Aggregation Database | African | Sub | 8732 | C=0.991 | G=0.009 |
The Genome Aggregation Database | American | Sub | 838 | C=0.930 | G=0.070 |
The Genome Aggregation Database | East Asian | Sub | 1618 | C=0.975 | G=0.025 |
The Genome Aggregation Database | Europe | Sub | 18474 | C=0.952 | G=0.047 |
The Genome Aggregation Database | Global | Study-wide | 29964 | C=0.964 | G=0.036 |
The Genome Aggregation Database | Other | Sub | 302 | C=0.930 | G=0.070 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | C=0.973 | G=0.026 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | C=0.953 | G=0.047 |
PMID | Title | Author | Journal |
---|---|---|---|
17158188 | Novel genes identified in a high-density genome wide association study for nicotine dependence. | Bierut LJ | Hum Mol Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs17706299 | 6.51E-05 | nicotine dependence | 17158188 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr11 | 108982801 | 108984125 | E070 | 1984 |
chr11 | 108984207 | 108984257 | E070 | 3390 |
chr11 | 108984380 | 108984430 | E070 | 3563 |
chr11 | 108984586 | 108984685 | E070 | 3769 |
chr11 | 108985289 | 108985888 | E070 | 4472 |
chr11 | 108985982 | 108986066 | E070 | 5165 |
chr11 | 108992332 | 108992570 | E070 | 11515 |
chr11 | 109019535 | 109019647 | E074 | 38718 |
chr11 | 109019677 | 109019809 | E074 | 38860 |
chr11 | 108942088 | 108942306 | E081 | -38511 |
chr11 | 108942408 | 108943081 | E081 | -37736 |
chr11 | 108943156 | 108943381 | E081 | -37436 |
chr11 | 108982801 | 108984125 | E081 | 1984 |
chr11 | 108984207 | 108984257 | E081 | 3390 |
chr11 | 108984380 | 108984430 | E081 | 3563 |
chr11 | 108984586 | 108984685 | E081 | 3769 |
chr11 | 108982801 | 108984125 | E082 | 1984 |
chr11 | 108984207 | 108984257 | E082 | 3390 |
chr11 | 108984380 | 108984430 | E082 | 3563 |
chr11 | 108984586 | 108984685 | E082 | 3769 |