rs17706334

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0035 (1077/29964,GnomAD)
G=0026 (776/29118,TOPMED)
G=0045 (223/5008,1000G)
G=0045 (173/3854,ALSPAC)
G=0047 (175/3708,TWINSUK)
chr11:109110137 (GRCh38.p7) (11q22.3)
ND
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.109110137A>G
GRCh37.p13 chr 11NC_000011.9:g.108980864A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.996G=0.004
1000GenomesAmericanSub694A=0.940G=0.060
1000GenomesEast AsianSub1008A=0.976G=0.024
1000GenomesEuropeSub1006A=0.957G=0.043
1000GenomesGlobalStudy-wide5008A=0.955G=0.045
1000GenomesSouth AsianSub978A=0.890G=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.955G=0.045
The Genome Aggregation DatabaseAfricanSub8720A=0.991G=0.009
The Genome Aggregation DatabaseAmericanSub838A=0.930G=0.070
The Genome Aggregation DatabaseEast AsianSub1618A=0.975G=0.025
The Genome Aggregation DatabaseEuropeSub18486A=0.952G=0.047
The Genome Aggregation DatabaseGlobalStudy-wide29964A=0.964G=0.035
The Genome Aggregation DatabaseOtherSub302A=0.930G=0.070
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.973G=0.026
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.953G=0.047
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs177063346.38E-05nicotine dependence17158188

eQTL of rs17706334 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17706334 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr11108982801108984125E0701937
chr11108984207108984257E0703343
chr11108984380108984430E0703516
chr11108984586108984685E0703722
chr11108985289108985888E0704425
chr11108985982108986066E0705118
chr11108992332108992570E07011468
chr11109019535109019647E07438671
chr11109019677109019809E07438813
chr11108942088108942306E081-38558
chr11108942408108943081E081-37783
chr11108943156108943381E081-37483
chr11108982801108984125E0811937
chr11108984207108984257E0813343
chr11108984380108984430E0813516
chr11108984586108984685E0813722
chr11108982801108984125E0821937
chr11108984207108984257E0823343
chr11108984380108984430E0823516
chr11108984586108984685E0823722