SNP Detail Info-rs17712228

Molecule type	Change	Amino acid[Codon]	SO Term
DCAF1 transcript variant 2	NM_001171904.1:c.	N/A	Intron Variant
DCAF1 transcript variant 1	NM_014703.2:c.	N/A	Intron Variant
VPRBP transcript variant X10	XM_005276753.4:c.	N/A	Intron Variant
VPRBP transcript variant X9	XM_005276755.4:c.	N/A	Intron Variant
VPRBP transcript variant X3	XM_011534273.2:c.	N/A	Intron Variant
VPRBP transcript variant X2	XM_011534274.2:c.	N/A	Intron Variant
VPRBP transcript variant X7	XM_011534275.2:c.	N/A	Intron Variant
VPRBP transcript variant X6	XM_011534276.2:c.	N/A	Intron Variant
VPRBP transcript variant X1	XM_011534277.2:c.	N/A	Intron Variant
VPRBP transcript variant X4	XM_017007546.1:c.	N/A	Intron Variant
VPRBP transcript variant X5	XM_017007547.1:c.	N/A	Intron Variant
VPRBP transcript variant X8	XM_017007548.1:c.	N/A	Intron Variant
VPRBP transcript variant X11	XM_017007549.1:c.	N/A	Intron Variant
VPRBP transcript variant X12	XM_017007550.1:c.	N/A	Intron Variant
VPRBP transcript variant X16	XM_017007551.1:c.	N/A	Intron Variant
VPRBP transcript variant X13	XR_001740385.1:n.	N/A	Intron Variant
VPRBP transcript variant X14	XR_001740386.1:n.	N/A	Intron Variant
VPRBP transcript variant X15	XR_001740387.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.885	A=0.115
1000Genomes	American	Sub	694	G=0.760	A=0.240
1000Genomes	East Asian	Sub	1008	G=0.647	A=0.353
1000Genomes	Europe	Sub	1006	G=0.980	A=0.020
1000Genomes	Global	Study-wide	5008	G=0.852	A=0.148
1000Genomes	South Asian	Sub	978	G=0.960	A=0.040
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.981	A=0.019
The Exome Aggregation Consortium	American	Sub	20804	G=0.738	A=0.261
The Exome Aggregation Consortium	Asian	Sub	24396	G=0.858	A=0.141
The Exome Aggregation Consortium	Europe	Sub	71478	G=0.979	A=0.020
The Exome Aggregation Consortium	Global	Study-wide	117546	G=0.911	A=0.088
The Exome Aggregation Consortium	Other	Sub	868	G=0.940	A=0.060
The Genome Aggregation Database	African	Sub	8728	G=0.908	A=0.092
The Genome Aggregation Database	American	Sub	838	G=0.640	A=0.360
The Genome Aggregation Database	East Asian	Sub	1604	G=0.658	A=0.342
The Genome Aggregation Database	Europe	Sub	18484	G=0.977	A=0.023
The Genome Aggregation Database	Global	Study-wide	29956	G=0.930	A=0.069
The Genome Aggregation Database	Other	Sub	302	G=0.980	A=0.020
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.916	A=0.083
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.986	A=0.014

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs17712228	0.000137	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr3	104810	105451	E067	43321
chr3	104810	105451	E069	43321
chr3	105525	105633	E069	44036
chr3	104810	105451	E071	43321
chr3	105525	105633	E071	44036
chr3	105525	105633	E072	44036
chr3	84315	84369	E081	22826
chr3	86105	86168	E081	24616
chr3	104810	105451	E081	43321
chr3	105525	105633	E081	44036
chr3	84315	84369	E082	22826
chr3	104810	105451	E082	43321
chr3	105525	105633	E082	44036

rs17712228