rs17787921

Homo sapiens
C>T
ZNF462 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
T=0015 (469/29982,GnomAD)
T=0023 (684/29118,TOPMED)
T=0028 (142/5008,1000G)
T=0000 (1/3854,ALSPAC)
T=0000 (1/3708,TWINSUK)
chr9:106869544 (GRCh38.p7) (9q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.106869544C>T
GRCh37.p13 chr 9NC_000009.11:g.109631825C>T

Gene: ZNF462, zinc finger protein 462(plus strand)

Molecule type Change Amino acid[Codon] SO Term
ZNF462 transcriptNM_021224.4:c.N/AIntron Variant
ZNF462 transcript variant X2XM_006717209.3:c.N/AIntron Variant
ZNF462 transcript variant X3XM_006717212.3:c.N/AIntron Variant
ZNF462 transcript variant X7XM_006717215.3:c.N/AIntron Variant
ZNF462 transcript variant X8XM_006717216.3:c.N/AIntron Variant
ZNF462 transcript variant X9XM_006717218.3:c.N/AIntron Variant
ZNF462 transcript variant X1XM_011518892.2:c.N/AIntron Variant
ZNF462 transcript variant X5XM_017014996.1:c.N/AIntron Variant
ZNF462 transcript variant X10XM_017014998.1:c.N/AIntron Variant
ZNF462 transcript variant X11XM_017014999.1:c.N/AIntron Variant
ZNF462 transcript variant X4XM_006717211.3:c.N/AGenic Upstream Transcript Variant
ZNF462 transcript variant X6XM_017014997.1:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.961T=0.039
1000GenomesAmericanSub694C=1.000T=0.000
1000GenomesEast AsianSub1008C=0.914T=0.086
1000GenomesEuropeSub1006C=0.999T=0.001
1000GenomesGlobalStudy-wide5008C=0.972T=0.028
1000GenomesSouth AsianSub978C=1.000T=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=1.000T=0.000
The Genome Aggregation DatabaseAfricanSub8728C=0.969T=0.031
The Genome Aggregation DatabaseAmericanSub838C=1.000T=0.000
The Genome Aggregation DatabaseEast AsianSub1618C=0.902T=0.098
The Genome Aggregation DatabaseEuropeSub18496C=0.998T=0.001
The Genome Aggregation DatabaseGlobalStudy-wide29982C=0.984T=0.015
The Genome Aggregation DatabaseOtherSub302C=1.000T=0.000
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.976T=0.023
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=1.000T=0.000
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs177879210.000449alcohol dependence20201924

eQTL of rs17787921 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17787921 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr9109627727109628045E067-3780
chr9109628885109628962E067-2863
chr9109629276109629458E067-2367
chr9109629611109629746E067-2079
chr9109629748109629811E067-2014
chr9109629855109629995E067-1830
chr9109630045109630099E067-1726
chr9109630243109630347E067-1478
chr9109630373109630487E067-1338
chr9109630501109630666E067-1159
chr9109630693109630785E067-1040
chr9109630873109631154E067-671
chr9109631164109632162E0670
chr9109632213109632297E067388
chr9109632344109632592E067519
chr9109633463109633613E0671638
chr9109633639109633800E0671814
chr9109633999109634069E0672174
chr9109634084109634134E0672259
chr9109634276109634390E0672451
chr9109635635109635696E0673810
chr9109635778109635841E0673953
chr9109635953109636060E0674128
chr9109636352109636396E0674527
chr9109636477109636605E0674652
chr9109636677109636721E0674852
chr9109636780109636881E0674955
chr9109636928109637339E0675103
chr9109637598109637719E0675773
chr9109637757109637801E0675932
chr9109637838109637893E0676013
chr9109637942109638153E0676117
chr9109638845109639000E0677020
chr9109639001109639228E0677176
chr9109640233109642068E0678408
chr9109642431109642999E06710606
chr9109643016109643666E06711191
chr9109652638109652688E06720813
chr9109652744109652888E06720919
chr9109652941109653190E06721116
chr9109659537109660359E06727712
chr9109660385109660435E06728560
chr9109627727109628045E068-3780
chr9109628067109628117E068-3708
chr9109628143109628193E068-3632
chr9109628255109628819E068-3006
chr9109629611109629746E068-2079
chr9109629748109629811E068-2014
chr9109629855109629995E068-1830
chr9109630045109630099E068-1726
chr9109630243109630347E068-1478
chr9109630373109630487E068-1338
chr9109630501109630666E068-1159
chr9109630693109630785E068-1040
chr9109630873109631154E068-671
chr9109631164109632162E0680
chr9109632213109632297E068388
chr9109632344109632592E068519
chr9109633072109633123E0681247
chr9109633143109633329E0681318
chr9109633351109633391E0681526
chr9109633463109633613E0681638
chr9109633639109633800E0681814
chr9109633999109634069E0682174
chr9109634084109634134E0682259
chr9109634276109634390E0682451
chr9109635778109635841E0683953
chr9109635953109636060E0684128
chr9109636352109636396E0684527
chr9109636477109636605E0684652
chr9109636677109636721E0684852
chr9109636780109636881E0684955
chr9109636928109637339E0685103
chr9109637598109637719E0685773
chr9109637757109637801E0685932
chr9109637838109637893E0686013
chr9109637942109638153E0686117
chr9109642431109642999E06810606
chr9109643016109643666E06811191
chr9109648836109649235E06817011
chr9109650681109650884E06818856
chr9109650921109651133E06819096
chr9109651166109652101E06819341
chr9109652214109652337E06820389
chr9109652498109652562E06820673
chr9109652638109652688E06820813
chr9109652744109652888E06820919
chr9109652941109653190E06821116
chr9109653262109653382E06821437
chr9109653634109653983E06821809
chr9109654042109654141E06822217
chr9109654166109654248E06822341
chr9109654336109654585E06822511
chr9109654638109654779E06822813
chr9109654833109655900E06823008
chr9109656199109656296E06824374
chr9109659033109659517E06827208
chr9109659537109660359E06827712
chr9109660385109660435E06828560
chr9109661668109661752E06829843
chr9109678415109680091E06846590
chr9109681106109681753E06849281
chr9109627727109628045E069-3780
chr9109628067109628117E069-3708
chr9109628143109628193E069-3632
chr9109630045109630099E069-1726
chr9109630243109630347E069-1478
chr9109630373109630487E069-1338
chr9109630501109630666E069-1159
chr9109630693109630785E069-1040
chr9109630873109631154E069-671
chr9109631164109632162E0690
chr9109632213109632297E069388
chr9109632344109632592E069519
chr9109633072109633123E0691247
chr9109633143109633329E0691318
chr9109633351109633391E0691526
chr9109633463109633613E0691638
chr9109633639109633800E0691814
chr9109633999109634069E0692174
chr9109634084109634134E0692259
chr9109634276109634390E0692451
chr9109635953109636060E0694128
chr9109636352109636396E0694527
chr9109636477109636605E0694652
chr9109636677109636721E0694852
chr9109636780109636881E0694955
chr9109636928109637339E0695103
chr9109637598109637719E0695773
chr9109637757109637801E0695932
chr9109637838109637893E0696013
chr9109637942109638153E0696117
chr9109638845109639000E0697020
chr9109639001109639228E0697176
chr9109639300109639350E0697475
chr9109639443109639572E0697618
chr9109640233109642068E0698408
chr9109642070109642235E06910245
chr9109642431109642999E06910606
chr9109643016109643666E06911191
chr9109646717109646843E06914892
chr9109647050109647161E06915225
chr9109647334109647384E06915509
chr9109647571109648250E06915746
chr9109650681109650884E06918856
chr9109650921109651133E06919096
chr9109651166109652101E06919341
chr9109652214109652337E06920389
chr9109652498109652562E06920673
chr9109652638109652688E06920813
chr9109652744109652888E06920919
chr9109652941109653190E06921116
chr9109653262109653382E06921437
chr9109654042109654141E06922217
chr9109656199109656296E06924374
chr9109656322109656565E06924497
chr9109659537109660359E06927712
chr9109660385109660435E06928560
chr9109660660109660745E06928835
chr9109660760109660810E06928935
chr9109661157109661232E06929332
chr9109661668109661752E06929843
chr9109674273109675032E06942448
chr9109675238109675930E06943413
chr9109628255109628819E070-3006
chr9109628885109628962E070-2863
chr9109629276109629458E070-2367
chr9109629611109629746E070-2079
chr9109629748109629811E070-2014
chr9109629855109629995E070-1830
chr9109630045109630099E070-1726
chr9109630243109630347E070-1478
chr9109630373109630487E070-1338
chr9109630501109630666E070-1159
chr9109630693109630785E070-1040
chr9109630873109631154E070-671
chr9109640233109642068E0708408
chr9109642431109642999E07010606
chr9109643016109643666E07011191
chr9109592382109593455E071-38370
chr9109627727109628045E071-3780
chr9109628067109628117E071-3708
chr9109628143109628193E071-3632
chr9109628255109628819E071-3006
chr9109628885109628962E071-2863
chr9109630045109630099E071-1726
chr9109630243109630347E071-1478
chr9109630373109630487E071-1338
chr9109630501109630666E071-1159
chr9109630693109630785E071-1040
chr9109630873109631154E071-671
chr9109631164109632162E0710
chr9109632213109632297E071388
chr9109632344109632592E071519
chr9109633072109633123E0711247
chr9109633143109633329E0711318
chr9109633351109633391E0711526
chr9109633463109633613E0711638
chr9109633639109633800E0711814
chr9109633999109634069E0712174
chr9109634084109634134E0712259
chr9109634276109634390E0712451
chr9109634424109634475E0712599
chr9109635778109635841E0713953
chr9109635953109636060E0714128
chr9109636352109636396E0714527
chr9109636477109636605E0714652
chr9109636677109636721E0714852
chr9109636780109636881E0714955
chr9109636928109637339E0715103
chr9109637598109637719E0715773
chr9109637757109637801E0715932
chr9109637838109637893E0716013
chr9109637942109638153E0716117
chr9109638845109639000E0717020
chr9109639001109639228E0717176
chr9109640233109642068E0718408
chr9109642431109642999E07110606
chr9109643016109643666E07111191
chr9109646717109646843E07114892
chr9109647050109647161E07115225
chr9109647334109647384E07115509
chr9109650179109650300E07118354
chr9109650681109650884E07118856
chr9109650921109651133E07119096
chr9109651166109652101E07119341
chr9109652214109652337E07120389
chr9109652498109652562E07120673
chr9109652638109652688E07120813
chr9109652744109652888E07120919
chr9109652941109653190E07121116
chr9109653262109653382E07121437
chr9109653634109653983E07121809
chr9109654042109654141E07122217
chr9109654166109654248E07122341
chr9109654833109655900E07123008
chr9109656199109656296E07124374
chr9109656322109656565E07124497
chr9109659033109659517E07127208
chr9109659537109660359E07127712
chr9109660385109660435E07128560
chr9109660660109660745E07128835
chr9109660760109660810E07128935
chr9109661157109661232E07129332
chr9109673698109673753E07141873
chr9109674273109675032E07142448
chr9109675238109675930E07143413
chr9109681106109681753E07149281
chr9109628255109628819E072-3006
chr9109630243109630347E072-1478
chr9109630373109630487E072-1338
chr9109630501109630666E072-1159
chr9109630693109630785E072-1040
chr9109630873109631154E072-671
chr9109631164109632162E0720
chr9109633072109633123E0721247
chr9109633143109633329E0721318
chr9109633351109633391E0721526
chr9109633463109633613E0721638
chr9109633639109633800E0721814
chr9109633999109634069E0722174
chr9109634084109634134E0722259
chr9109634276109634390E0722451
chr9109634424109634475E0722599
chr9109635778109635841E0723953
chr9109635953109636060E0724128
chr9109636352109636396E0724527
chr9109636477109636605E0724652
chr9109636677109636721E0724852
chr9109636780109636881E0724955
chr9109636928109637339E0725103
chr9109637598109637719E0725773
chr9109637757109637801E0725932
chr9109637838109637893E0726013
chr9109637942109638153E0726117
chr9109638845109639000E0727020
chr9109642431109642999E07210606
chr9109643016109643666E07211191
chr9109647050109647161E07215225
chr9109647334109647384E07215509
chr9109650681109650884E07218856
chr9109650921109651133E07219096
chr9109651166109652101E07219341
chr9109652498109652562E07220673
chr9109652638109652688E07220813
chr9109652744109652888E07220919
chr9109652941109653190E07221116
chr9109659537109660359E07227712
chr9109660385109660435E07228560
chr9109660660109660745E07228835
chr9109660760109660810E07228935
chr9109661157109661232E07229332
chr9109661668109661752E07229843
chr9109673698109673753E07241873
chr9109677864109678019E07246039
chr9109678046109678313E07246221
chr9109678415109680091E07246590
chr9109630373109630487E073-1338
chr9109630501109630666E073-1159
chr9109630693109630785E073-1040
chr9109630873109631154E073-671
chr9109631164109632162E0730
chr9109633463109633613E0731638
chr9109633639109633800E0731814
chr9109633999109634069E0732174
chr9109634084109634134E0732259
chr9109634276109634390E0732451
chr9109635953109636060E0734128
chr9109636477109636605E0734652
chr9109636677109636721E0734852
chr9109636780109636881E0734955
chr9109636928109637339E0735103
chr9109637942109638153E0736117
chr9109640233109642068E0738408
chr9109642070109642235E07310245
chr9109642431109642999E07310606
chr9109643016109643666E07311191
chr9109651166109652101E07319341
chr9109653634109653983E07321809
chr9109654042109654141E07322217
chr9109654166109654248E07322341
chr9109659537109660359E07327712
chr9109660385109660435E07328560
chr9109660660109660745E07328835
chr9109660760109660810E07328935
chr9109627727109628045E074-3780
chr9109628067109628117E074-3708
chr9109628143109628193E074-3632
chr9109628255109628819E074-3006
chr9109630045109630099E074-1726
chr9109630243109630347E074-1478
chr9109630373109630487E074-1338
chr9109630501109630666E074-1159
chr9109630693109630785E074-1040
chr9109630873109631154E074-671
chr9109631164109632162E0740
chr9109632213109632297E074388
chr9109632344109632592E074519
chr9109633072109633123E0741247
chr9109633143109633329E0741318
chr9109633351109633391E0741526
chr9109633463109633613E0741638
chr9109633639109633800E0741814
chr9109633999109634069E0742174
chr9109634084109634134E0742259
chr9109634276109634390E0742451
chr9109634424109634475E0742599
chr9109635635109635696E0743810
chr9109635778109635841E0743953
chr9109635953109636060E0744128
chr9109636352109636396E0744527
chr9109636477109636605E0744652
chr9109636677109636721E0744852
chr9109636780109636881E0744955
chr9109636928109637339E0745103
chr9109637598109637719E0745773
chr9109637757109637801E0745932
chr9109637838109637893E0746013
chr9109637942109638153E0746117
chr9109638845109639000E0747020
chr9109640233109642068E0748408
chr9109642070109642235E07410245
chr9109642431109642999E07410606
chr9109643016109643666E07411191
chr9109644547109644597E07412722
chr9109646717109646843E07414892
chr9109647050109647161E07415225
chr9109647334109647384E07415509
chr9109647571109648250E07415746
chr9109648836109649235E07417011
chr9109649281109649374E07417456
chr9109649436109649671E07417611
chr9109650681109650884E07418856
chr9109650921109651133E07419096
chr9109651166109652101E07419341
chr9109652214109652337E07420389
chr9109652498109652562E07420673
chr9109652638109652688E07420813
chr9109652744109652888E07420919
chr9109652941109653190E07421116
chr9109653262109653382E07421437
chr9109653634109653983E07421809
chr9109654833109655900E07423008
chr9109658603109658726E07426778
chr9109658732109658782E07426907
chr9109658862109658912E07427037
chr9109659033109659517E07427208
chr9109659537109660359E07427712
chr9109660385109660435E07428560
chr9109660660109660745E07428835
chr9109660760109660810E07428935
chr9109661157109661232E07429332
chr9109674273109675032E07442448
chr9109678415109680091E07446590
chr9109681106109681753E07449281
chr9109629276109629458E081-2367
chr9109629611109629746E081-2079
chr9109629748109629811E081-2014
chr9109629855109629995E081-1830
chr9109630501109630666E081-1159
chr9109630693109630785E081-1040
chr9109630873109631154E081-671
chr9109633143109633329E0811318
chr9109633351109633391E0811526
chr9109633463109633613E0811638
chr9109633639109633800E0811814
chr9109636477109636605E0814652
chr9109636677109636721E0814852
chr9109636780109636881E0814955
chr9109636928109637339E0815103
chr9109637598109637719E0815773
chr9109637757109637801E0815932
chr9109637838109637893E0816013
chr9109637942109638153E0816117
chr9109638845109639000E0817020
chr9109639001109639228E0817176
chr9109639300109639350E0817475
chr9109640233109642068E0818408
chr9109642070109642235E08110245
chr9109650681109650884E08118856
chr9109650921109651133E08119096
chr9109651166109652101E08119341
chr9109652214109652337E08120389
chr9109630045109630099E082-1726
chr9109630243109630347E082-1478
chr9109630373109630487E082-1338
chr9109630501109630666E082-1159
chr9109630693109630785E082-1040
chr9109630873109631154E082-671
chr9109631164109632162E0820
chr9109632213109632297E082388
chr9109632344109632592E082519
chr9109637757109637801E0825932
chr9109637838109637893E0826013
chr9109637942109638153E0826117
chr9109650921109651133E08219096
chr9109651166109652101E08219341
chr9109652214109652337E08220389










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr9109622034109627675E067-4150
chr9109622034109627675E068-4150
chr9109622034109627675E069-4150
chr9109622034109627675E070-4150
chr9109622034109627675E071-4150
chr9109622034109627675E072-4150
chr9109622034109627675E073-4150
chr9109622034109627675E074-4150
chr9109622034109627675E081-4150
chr9109621348109622010E082-9815
chr9109622034109627675E082-4150