rs17790906

Homo sapiens
T>G
ZNF764 : 2KB Upstream Variant
Check p-value
SNV (Single Nucleotide Variation)
G=0073 (2207/29868,GnomAD)
G=0059 (1726/29118,TOPMED)
G=0034 (170/5008,1000G)
G=0109 (419/3854,ALSPAC)
G=0107 (398/3708,TWINSUK)
chr16:30558338 (GRCh38.p7) (16p11.2)
AD
GWASdb2
1   publication(s)
See rs on genome
149 Enhancers around
60 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.30558338T>G
GRCh37.p13 chr 16NC_000016.9:g.30569659T>G

Gene: ZNF764, zinc finger protein 764(minus strand): 2KB Upstream Variant

Molecule type Change Amino acid[Codon] SO Term
ZNF764 transcript variant 2NM_001172679.1:c.N/AUpstream Transcript Variant
ZNF764 transcript variant 1NM_033410.3:c.N/AUpstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.973G=0.027
1000GenomesAmericanSub694T=0.960G=0.040
1000GenomesEast AsianSub1008T=0.997G=0.003
1000GenomesEuropeSub1006T=0.901G=0.099
1000GenomesGlobalStudy-wide5008T=0.966G=0.034
1000GenomesSouth AsianSub978T=1.000G=0.000
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.891G=0.109
The Genome Aggregation DatabaseAfricanSub8696T=0.969G=0.031
The Genome Aggregation DatabaseAmericanSub838T=0.970G=0.030
The Genome Aggregation DatabaseEast AsianSub1614T=0.999G=0.001
The Genome Aggregation DatabaseEuropeSub18418T=0.896G=0.103
The Genome Aggregation DatabaseGlobalStudy-wide29868T=0.926G=0.073
The Genome Aggregation DatabaseOtherSub302T=0.980G=0.020
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.940G=0.059
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.893G=0.107
PMID Title Author Journal
22481050Genetic influences on craving for alcohol.Agrawal AAddict Behav

P-Value

SNP ID p-value Traits Study
rs177909063.73E-05alcohol craving with or without dependence22481050

eQTL of rs17790906 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17790906 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr163053585930536208E067-33451
chr163053623230536337E067-33322
chr163053637630536470E067-33189
chr163054445530544778E067-24881
chr163058161530582040E06711956
chr163060930130609371E06739642
chr163053546930535738E068-33921
chr163053585930536208E068-33451
chr163053623230536337E068-33322
chr163053637630536470E068-33189
chr163053650030536862E068-32797
chr163053690130537000E068-32659
chr163053701830537155E068-32504
chr163056461430564654E068-5005
chr163056478830565009E068-4650
chr163056512930565183E068-4476
chr163056836030568447E068-1212
chr163058143130581554E06811772
chr163053623230536337E069-33322
chr163053637630536470E069-33189
chr163053650030536862E069-32797
chr163053690130537000E069-32659
chr163053701830537155E069-32504
chr163056461430564654E069-5005
chr163056478830565009E069-4650
chr163056512930565183E069-4476
chr163056542830565490E069-4169
chr163058161530582040E06911956
chr163060889130608946E06939232
chr163060901930609069E06939360
chr163060930130609371E06939642
chr163053546930535738E070-33921
chr163053585930536208E070-33451
chr163053623230536337E070-33322
chr163053637630536470E070-33189
chr163053650030536862E070-32797
chr163053690130537000E070-32659
chr163053701830537155E070-32504
chr163054445530544778E070-24881
chr163056430230564381E070-5278
chr163056443130564525E070-5134
chr163056461430564654E070-5005
chr163056478830565009E070-4650
chr163056512930565183E070-4476
chr163056542830565490E070-4169
chr163056581930565896E070-3763
chr163056748630567855E070-1804
chr163056786830567945E070-1714
chr163058066730580915E07011008
chr163058113930581324E07011480
chr163058424230584292E07014583
chr163058463830584977E07014979
chr163059290530592984E07023246
chr163059308230593132E07023423
chr163059365330593703E07023994
chr163059388530593972E07024226
chr163059415630594206E07024497
chr163059428330594334E07024624
chr163059439930594449E07024740
chr163059451830594570E07024859
chr163059460830594677E07024949
chr163059478430594943E07025125
chr163059822230598295E07028563
chr163059832830598426E07028669
chr163059851230598600E07028853
chr163053546930535738E071-33921
chr163053585930536208E071-33451
chr163053623230536337E071-33322
chr163053637630536470E071-33189
chr163053650030536862E071-32797
chr163053690130537000E071-32659
chr163053701830537155E071-32504
chr163056461430564654E071-5005
chr163056478830565009E071-4650
chr163056512930565183E071-4476
chr163057049430570566E071835
chr163058143130581554E07111772
chr163058161530582040E07111956
chr163060940430609815E07139745
chr163061515330615356E07145494
chr163061536630615516E07145707
chr163061554130616009E07145882
chr163061608830616174E07146429
chr163061938530619618E07149726
chr163054445530544778E072-24881
chr163056443130564525E072-5134
chr163056461430564654E072-5005
chr163056478830565009E072-4650
chr163056512930565183E072-4476
chr163056542830565490E072-4169
chr163056581930565896E072-3763
chr163059308230593132E07223423
chr163059822230598295E07228563
chr163059832830598426E07228669
chr163061880030618857E07249141
chr163061898230619026E07249323
chr163061925130619301E07249592
chr163061938530619618E07249726
chr163053546930535738E073-33921
chr163054041130540522E073-29137
chr163054053130540673E073-28986
chr163054069330540752E073-28907
chr163054445530544778E073-24881
chr163056443130564525E073-5134
chr163056461430564654E073-5005
chr163056478830565009E073-4650
chr163056512930565183E073-4476
chr163058143130581554E07311772
chr163059388530593972E07324226
chr163059415630594206E07324497
chr163056443130564525E074-5134
chr163056461430564654E074-5005
chr163056478830565009E074-4650
chr163056512930565183E074-4476
chr163056542830565490E074-4169
chr163058161530582040E07411956
chr163060940430609815E07439745
chr163053546930535738E081-33921
chr163053585930536208E081-33451
chr163053701830537155E081-32504
chr163056748630567855E081-1804
chr163056786830567945E081-1714
chr163056803730568139E081-1520
chr163056836030568447E081-1212
chr163057049430570566E081835
chr163058113930581324E08111480
chr163058143130581554E08111772
chr163058161530582040E08111956
chr163058424230584292E08114583
chr163058463830584977E08114979
chr163059308230593132E08123423
chr163059365330593703E08123994
chr163059388530593972E08124226
chr163059415630594206E08124497
chr163059822230598295E08128563
chr163059832830598426E08128669
chr163053585930536208E082-33451
chr163053623230536337E082-33322
chr163053637630536470E082-33189
chr163053650030536862E082-32797
chr163053690130537000E082-32659
chr163054053130540673E082-28986
chr163054069330540752E082-28907
chr163054077230541111E082-28548
chr163054784630547996E082-21663
chr163058161530582040E08211956
chr163059365330593703E08223994
chr163059388530593972E08224226
chr163059415630594206E08224497










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr163053724830539630E067-30029
chr163054548530547780E067-21879
chr163056902630570298E0670
chr163057236730573116E0672708
chr163058210030583854E06712441
chr163059612930597861E06726470
chr163053724830539630E068-30029
chr163054548530547780E068-21879
chr163056902630570298E0680
chr163057236730573116E0682708
chr163058210030583854E06812441
chr163059612930597861E06826470
chr163053724830539630E069-30029
chr163054548530547780E069-21879
chr163056902630570298E0690
chr163057236730573116E0692708
chr163057327430573375E0693615
chr163058210030583854E06912441
chr163059612930597861E06926470
chr163053724830539630E070-30029
chr163054548530547780E070-21879
chr163056902630570298E0700
chr163058210030583854E07012441
chr163059612930597861E07026470
chr163053724830539630E071-30029
chr163054548530547780E071-21879
chr163056902630570298E0710
chr163057236730573116E0712708
chr163057327430573375E0713615
chr163058210030583854E07112441
chr163059612930597861E07126470
chr163053724830539630E072-30029
chr163054548530547780E072-21879
chr163056902630570298E0720
chr163057236730573116E0722708
chr163057327430573375E0723615
chr163058210030583854E07212441
chr163059612930597861E07226470
chr163053724830539630E073-30029
chr163054548530547780E073-21879
chr163056902630570298E0730
chr163057236730573116E0732708
chr163058210030583854E07312441
chr163059612930597861E07326470
chr163053724830539630E074-30029
chr163054548530547780E074-21879
chr163056902630570298E0740
chr163057236730573116E0742708
chr163058210030583854E07412441
chr163059612930597861E07426470
chr163053724830539630E081-30029
chr163054548530547780E081-21879
chr163056902630570298E0810
chr163058210030583854E08112441
chr163059612930597861E08126470
chr163053724830539630E082-30029
chr163054548530547780E082-21879
chr163056902630570298E0820
chr163058210030583854E08212441
chr163059612930597861E08226470