SNP Detail Info-rs1779517

Organism: Homo sapiens

Alleles: C>A / C>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

C==0230 (6879/29904,GnomAD)
C==0213 (6218/29118,TOPMED)
C==0216 (1082/5008,1000G)
C==0279 (1076/3854,ALSPAC)
C==0277 (1026/3708,TWINSUK)

Position: chr14:41261318 (GRCh38.p7) (14q21.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	C=0.114	A=0.883
1000Genomes	American	Sub	694	C=0.210	A=0.79,
1000Genomes	East Asian	Sub	1008	C=0.198	A=0.802
1000Genomes	Europe	Sub	1006	C=0.262	A=0.738
1000Genomes	Global	Study-wide	5008	C=0.216	A=0.783
1000Genomes	South Asian	Sub	978	C=0.330	A=0.67,
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	C=0.279	A=0.721
The Genome Aggregation Database	African	Sub	8712	C=0.169	G=0.002
The Genome Aggregation Database	American	Sub	834	C=0.170	G=0.00,
The Genome Aggregation Database	East Asian	Sub	1610	C=0.202	G=0.000
The Genome Aggregation Database	Europe	Sub	18446	C=0.263	G=0.000
The Genome Aggregation Database	Global	Study-wide	29904	C=0.230	G=0.000
The Genome Aggregation Database	Other	Sub	302	C=0.240	G=0.00,
Trans-Omics for Precision Medicine	Global	Study-wide	29118	C=0.213	A=0.786
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	C=0.277	A=0.723

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs1779517	0.000112	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1779517