rs17809565

Homo sapiens
A>G / A>T
None
Check p-value
SNV (Single Nucleotide Variation)
G=0206 (6189/29954,GnomAD)
G=0159 (4634/29118,TOPMED)
G=0127 (636/5008,1000G)
G=0271 (1043/3854,ALSPAC)
G=0277 (1026/3708,TWINSUK)
chr3:20696597 (GRCh38.p7) (3p24.3)
AD
GWASdb2
1   publication(s)
See rs on genome
20 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 3NC_000003.12:g.20696597A>G
GRCh38.p7 chr 3NC_000003.12:g.20696597A>T
GRCh37.p13 chr 3NC_000003.11:g.20738089A>G
GRCh37.p13 chr 3NC_000003.11:g.20738089A>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.989G=0.011
1000GenomesAmericanSub694A=0.750G=0.250
1000GenomesEast AsianSub1008A=0.970G=0.030
1000GenomesEuropeSub1006A=0.749G=0.251
1000GenomesGlobalStudy-wide5008A=0.873G=0.127
1000GenomesSouth AsianSub978A=0.830G=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.729G=0.271
The Genome Aggregation DatabaseAfricanSub8728A=0.951G=0.049
The Genome Aggregation DatabaseAmericanSub838A=0.720G=0.280
The Genome Aggregation DatabaseEast AsianSub1622A=0.980G=0.020
The Genome Aggregation DatabaseEuropeSub18464A=0.706G=0.293
The Genome Aggregation DatabaseGlobalStudy-wide29954A=0.793G=0.206
The Genome Aggregation DatabaseOtherSub302A=0.770G=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.840G=0.159
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.723G=0.277
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs178095650.000524alcohol dependence20201924

eQTL of rs17809565 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs17809565 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr37489760674897665E070-35338
chr37489771374897763E070-35240
chr37496459574964649E07031592
chr37496473374964947E07031730
chr37496507074965200E07032067
chr37490673274906857E081-26146
chr37490698874907142E081-25861
chr37490730774907560E081-25443
chr37490766074907824E081-25179
chr37490819274908343E081-24660
chr37491133374911489E081-21514
chr37491179074911914E081-21089
chr37491353974913589E081-19414
chr37490819274908343E082-24660
chr37491055074910610E082-22393
chr37491114274911192E082-21811
chr37491133374911489E082-21514
chr37491179074911914E082-21089
chr37491538874916366E082-16637
chr37496507074965200E08232067