rs1781276

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0278 (8337/29912,GnomAD)
T=0299 (8721/29118,TOPMED)
T=0326 (1631/5008,1000G)
T=0227 (873/3854,ALSPAC)
T=0227 (840/3708,TWINSUK)
chr9:8206576 (GRCh38.p7) (9p24.1)
AD
GWASdb2
1   publication(s)
See rs on genome
34 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.8206576C>T
GRCh37.p13 chr 9NC_000009.11:g.8206576C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.601T=0.399
1000GenomesAmericanSub694C=0.680T=0.320
1000GenomesEast AsianSub1008C=0.671T=0.329
1000GenomesEuropeSub1006C=0.760T=0.240
1000GenomesGlobalStudy-wide5008C=0.674T=0.326
1000GenomesSouth AsianSub978C=0.690T=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.773T=0.227
The Genome Aggregation DatabaseAfricanSub8712C=0.631T=0.369
The Genome Aggregation DatabaseAmericanSub836C=0.700T=0.300
The Genome Aggregation DatabaseEast AsianSub1602C=0.684T=0.316
The Genome Aggregation DatabaseEuropeSub18460C=0.767T=0.232
The Genome Aggregation DatabaseGlobalStudy-wide29912C=0.721T=0.278
The Genome Aggregation DatabaseOtherSub302C=0.760T=0.240
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.700T=0.299
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.773T=0.227
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs17812760.000574alcohol dependence20201924

eQTL of rs1781276 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1781276 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr982327038232835E06926127
chr982337178233781E06927141
chr982338988234112E06927322
chr982341978234763E06927621
chr982446968244848E06938120
chr981701718170315E070-36261
chr982446968244848E07038120
chr982452098245253E07038633
chr982463268246375E07039750
chr982464388246526E07039862
chr982466068247084E07040030
chr981714698171549E071-35027
chr981781248178256E071-28320
chr981784858178525E071-28051
chr981799478180005E071-26571
chr982328448232961E07126268
chr982341978234763E07127621
chr982446968244848E07138120
chr981799478180005E072-26571
chr981887378189033E072-17543
chr982338988234112E07227322
chr982341978234763E07227621
chr982446968244848E07238120
chr981714698171549E074-35027
chr981794428179904E074-26672
chr981799478180005E074-26571
chr981829078182947E074-23629
chr981831298183183E074-23393
chr982338988234112E08127322
chr982341978234763E08127621
chr982338988234112E08227322
chr982341978234763E08227621
chr982464388246526E08239862
chr982466068247084E08240030