SNP Detail Info-rs1782155

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0238 (7124/29826,GnomAD)
G==0220 (6430/29118,TOPMED)
G==0230 (1154/5008,1000G)
G==0283 (1091/3854,ALSPAC)
G==0282 (1047/3708,TWINSUK)

Position: chr14:41282395 (GRCh38.p7) (14q21.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 3 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.41282395G>A
GRCh37.p13 chr 14	NC_000014.8:g.41751598G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.126	A=0.874
1000Genomes	American	Sub	694	G=0.210	A=0.790
1000Genomes	East Asian	Sub	1008	G=0.250	A=0.750
1000Genomes	Europe	Sub	1006	G=0.263	A=0.737
1000Genomes	Global	Study-wide	5008	G=0.230	A=0.770
1000Genomes	South Asian	Sub	978	G=0.330	A=0.670
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.283	A=0.717
The Genome Aggregation Database	African	Sub	8720	G=0.183	A=0.817
The Genome Aggregation Database	American	Sub	828	G=0.170	A=0.830
The Genome Aggregation Database	East Asian	Sub	1582	G=0.261	A=0.739
The Genome Aggregation Database	Europe	Sub	18394	G=0.266	A=0.733
The Genome Aggregation Database	Global	Study-wide	29826	G=0.238	A=0.761
The Genome Aggregation Database	Other	Sub	302	G=0.250	A=0.750
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.220	A=0.779
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.282	A=0.718

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs1782155	0.00012	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr14	41754505	41754720	E070	2907
chr14	41747200	41747372	E081	-4226
chr14	41747200	41747372	E082	-4226

rs1782155