rs1782156

Homo sapiens
T>A
None
Check p-value
SNV (Single Nucleotide Variation)
T==0267 (7954/29782,GnomAD)
T==0247 (7206/29118,TOPMED)
T==0330 (1652/5008,1000G)
T==0285 (1097/3854,ALSPAC)
T==0285 (1057/3708,TWINSUK)
chr14:41283466 (GRCh38.p7) (14q21.1)
ND
GWASdb2
1   publication(s)
See rs on genome
3 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.41283466T>A
GRCh37.p13 chr 14NC_000014.8:g.41752669T>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.170A=0.830
1000GenomesAmericanSub694T=0.280A=0.720
1000GenomesEast AsianSub1008T=0.532A=0.468
1000GenomesEuropeSub1006T=0.267A=0.733
1000GenomesGlobalStudy-wide5008T=0.330A=0.670
1000GenomesSouth AsianSub978T=0.430A=0.570
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.285A=0.715
The Genome Aggregation DatabaseAfricanSub8698T=0.214A=0.786
The Genome Aggregation DatabaseAmericanSub834T=0.270A=0.730
The Genome Aggregation DatabaseEast AsianSub1564T=0.502A=0.498
The Genome Aggregation DatabaseEuropeSub18386T=0.272A=0.727
The Genome Aggregation DatabaseGlobalStudy-wide29782T=0.267A=0.732
The Genome Aggregation DatabaseOtherSub300T=0.250A=0.750
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.247A=0.752
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.285A=0.715
PMID Title Author Journal
17158188Novel genes identified in a high-density genome wide association study for nicotine dependence.Bierut LJHum Mol Genet

P-Value

SNP ID p-value Traits Study
rs17821560.000371nicotine dependence17158188

eQTL of rs1782156 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1782156 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr144175450541754720E0701836
chr144174720041747372E081-5297
chr144174720041747372E082-5297