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rs1782181
Organism:
Homo sapiens
Alleles:
G>A
Gene : Feature
None
p-value:
Check p-value
Variation Type:
SNV (Single Nucleotide Variation)
Frequency:
G==0248 (7432/29896,GnomAD)
G==0234 (6838/29118,TOPMED)
G==0257 (1289/5008,1000G)
G==0284 (1094/3854,ALSPAC)
G==0279 (1034/3708,TWINSUK)
Position:
chr14:41227493 (GRCh38.p7) (14q21.1)
Phenotype:
ND
Dataset:
GWASdb2
Publications:
1 publication(s)
Genomic View:
See rs on genome
Enhancer:
0 Enhancer around
Promoter:
0 Promoter around
Variant Details
Frequency
Publications
p-values
eSNP
meSNP
Genomic Coordinates
Sequence Name
Change(s)
GRCh38.p7 chr 14
NC_000014.9:g.41227493G>A
GRCh37.p13 chr 14
NC_000014.8:g.41696696G>A
Population Frequency
Study
Population
Group
Sample #
Ref Allele
Alt Allele
1000Genomes
African
Sub
1322
G=0.182
A=0.818
1000Genomes
American
Sub
694
G=0.220
A=0.780
1000Genomes
East Asian
Sub
1008
G=0.303
A=0.697
1000Genomes
Europe
Sub
1006
G=0.263
A=0.737
1000Genomes
Global
Study-wide
5008
G=0.257
A=0.743
1000Genomes
South Asian
Sub
978
G=0.340
A=0.660
The Avon Longitudinal Study of Parents and Children
PARENT AND CHILD COHORT
Study-wide
3854
G=0.284
A=0.716
The Genome Aggregation Database
African
Sub
8722
G=0.210
A=0.790
The Genome Aggregation Database
American
Sub
838
G=0.180
A=0.820
The Genome Aggregation Database
East Asian
Sub
1608
G=0.300
A=0.700
The Genome Aggregation Database
Europe
Sub
18426
G=0.265
A=0.734
The Genome Aggregation Database
Global
Study-wide
29896
G=0.248
A=0.751
The Genome Aggregation Database
Other
Sub
302
G=0.240
A=0.760
Trans-Omics for Precision Medicine
Global
Study-wide
29118
G=0.234
A=0.765
UK 10K study - Twins
TWIN COHORT
Study-wide
3708
G=0.279
A=0.721
PMID
Title
Author
Journal
17158188
Novel genes identified in a high-density genome wide association study for nicotine dependence.
Bierut LJ
Hum Mol Genet
P-Value
SNP ID
p-value
Traits
Study
rs1782181
0.000157
nicotine dependence
17158188
eQTL of rs1782181 in Brain tissues (GTEx Analysis Release V7)
Position (v37)
eGene
GeneID
Variant
p-value
TSS
Tissue
There is no eQTL annotation for this SNP
meQTL of rs1782181 in Fetal Brain
Probe ID
Position
Gene
beta
p-value
There is no meQTL annotation for this SNP
Genomic View
GRCh38.p7 chr 14(NC_000014.9:g.41227493G>A)
GRCh37.p13 chr 14(NC_000014.8:g.41696696G>A)
Chromatin Interaction
There is no significant Hi-C chromatin interaction data for this SNP.