SNP Detail Info-rs1782182

Organism: Homo sapiens

Alleles: G>A

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G==0240 (7102/29556,GnomAD)
G==0225 (6577/29118,TOPMED)
G==0248 (1243/5008,1000G)
G==0283 (1090/3854,ALSPAC)
G==0278 (1031/3708,TWINSUK)

Position: chr14:41227938 (GRCh38.p7) (14q21.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.41227938G>A
GRCh37.p13 chr 14	NC_000014.8:g.41697141G>A

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	G=0.148	A=0.852
1000Genomes	American	Sub	694	G=0.210	A=0.790
1000Genomes	East Asian	Sub	1008	G=0.303	A=0.697
1000Genomes	Europe	Sub	1006	G=0.263	A=0.737
1000Genomes	Global	Study-wide	5008	G=0.248	A=0.752
1000Genomes	South Asian	Sub	978	G=0.340	A=0.660
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	G=0.283	A=0.717
The Genome Aggregation Database	African	Sub	8680	G=0.186	A=0.814
The Genome Aggregation Database	American	Sub	802	G=0.170	A=0.830
The Genome Aggregation Database	East Asian	Sub	1616	G=0.303	A=0.697
The Genome Aggregation Database	Europe	Sub	18158	G=0.263	A=0.736
The Genome Aggregation Database	Global	Study-wide	29556	G=0.240	A=0.759
The Genome Aggregation Database	Other	Sub	300	G=0.240	A=0.760
Trans-Omics for Precision Medicine	Global	Study-wide	29118	G=0.225	A=0.774
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	G=0.278	A=0.722

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs1782182	5.28E-05	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1782182