SNP Detail Info-rs1785039

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0225 (6744/29950,GnomAD)
G=0229 (6672/29118,TOPMED)
G=0249 (1249/5008,1000G)
G=0189 (730/3854,ALSPAC)
G=0193 (717/3708,TWINSUK)

Position: chr11:128030684 (GRCh38.p7) (11q24.3)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 2 Enhancers around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 11	NC_000011.10:g.128030684A>G
GRCh37.p13 chr 11	NC_000011.9:g.127900579A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.720	G=0.280
1000Genomes	American	Sub	694	A=0.810	G=0.190
1000Genomes	East Asian	Sub	1008	A=0.694	G=0.306
1000Genomes	Europe	Sub	1006	A=0.798	G=0.202
1000Genomes	Global	Study-wide	5008	A=0.751	G=0.249
1000Genomes	South Asian	Sub	978	A=0.760	G=0.240
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.811	G=0.189
The Genome Aggregation Database	African	Sub	8706	A=0.701	G=0.299
The Genome Aggregation Database	American	Sub	838	A=0.820	G=0.180
The Genome Aggregation Database	East Asian	Sub	1614	A=0.721	G=0.279
The Genome Aggregation Database	Europe	Sub	18490	A=0.813	G=0.186
The Genome Aggregation Database	Global	Study-wide	29950	A=0.774	G=0.225
The Genome Aggregation Database	Other	Sub	302	A=0.710	G=0.290
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.770	G=0.229
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.807	G=0.193

PMID	Title	Author	Journal
21529783	A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.	Heath AC	Biol Psychiatry

SNP ID	p-value	Traits	Study
rs1785039	6.1E-05	alcoholism (heaviness of drinking)	21529783

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

Chromosome	Start	End	Region	Distance ( -/+ : Up/Downstream )
chr11	127940765	127940822	E070	40186
chr11	127941221	127941271	E070	40642

rs1785039