rs1790063

Homo sapiens
G>A
P2RY6 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0135 (4033/29866,GnomAD)
A=0113 (3296/29118,TOPMED)
A=0159 (797/5008,1000G)
A=0145 (559/3854,ALSPAC)
A=0165 (611/3708,TWINSUK)
chr11:73284867 (GRCh38.p7) (11q13.4)
AD
GWASdb2
1   publication(s)
See rs on genome

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.73284867G>A
GRCh37.p13 chr 11NC_000011.9:g.72995912G>A

Gene: P2RY6, pyrimidinergic receptor P2Y6(plus strand)

Molecule type Change Amino acid[Codon] SO Term
P2RY6 transcript variant 5NM_001277204.1:c.N/AIntron Variant
P2RY6 transcript variant 6NM_001277205.1:c.N/AIntron Variant
P2RY6 transcript variant 7NM_001277206.1:c.N/AIntron Variant
P2RY6 transcript variant 8NM_001277207.1:c.N/AIntron Variant
P2RY6 transcript variant 9NM_001277208.1:c.N/AIntron Variant
P2RY6 transcript variant 3NM_176796.2:c.N/AIntron Variant
P2RY6 transcript variant 1NM_176797.2:c.N/AIntron Variant
P2RY6 transcript variant 2NM_176798.2:c.N/AIntron Variant
P2RY6 transcript variant X1XM_011545076.2:c.N/AIntron Variant
P2RY6 transcript variant X2XM_011545077.2:c.N/AIntron Variant
P2RY6 transcript variant X4XM_011545079.2:c.N/AIntron Variant
P2RY6 transcript variant X5XM_005274022.3:c.N/AGenic Upstream Transcript Variant
P2RY6 transcript variant X3XM_006718571.3:c.N/AGenic Upstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.990A=0.010
1000GenomesAmericanSub694G=0.920A=0.080
1000GenomesEast AsianSub1008G=0.755A=0.245
1000GenomesEuropeSub1006G=0.823A=0.177
1000GenomesGlobalStudy-wide5008G=0.841A=0.159
1000GenomesSouth AsianSub978G=0.690A=0.310
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.855A=0.145
The Genome Aggregation DatabaseAfricanSub8720G=0.969A=0.031
The Genome Aggregation DatabaseAmericanSub832G=0.900A=0.100
The Genome Aggregation DatabaseEast AsianSub1616G=0.774A=0.226
The Genome Aggregation DatabaseEuropeSub18396G=0.822A=0.178
The Genome Aggregation DatabaseGlobalStudy-wide29866G=0.865A=0.135
The Genome Aggregation DatabaseOtherSub302G=0.900A=0.100
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.886A=0.113
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.835A=0.165
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs17900630.000524alcohol dependence21314694

eQTL of rs1790063 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1790063 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr117299966473000954E0673752
chr117300099573001100E0675083
chr117302509473027226E06729182
chr117302730473027643E06731392
chr117302774473027851E06731832
chr117302814773028391E06732235
chr117302845773028741E06732545
chr117302875073029221E06732838
chr117302931173029365E06733399
chr117302973373029805E06733821
chr117302981173029868E06733899
chr117303174973031889E06735837
chr117303193273032532E06736020
chr117303256073034189E06736648
chr117303716373037236E06741251
chr117295196572952099E068-43813
chr117295321372954219E068-41693
chr117299861872998736E0682706
chr117299882172998936E0682909
chr117299896872999121E0683056
chr117299966473000954E0683752
chr117300099573001100E0685083
chr117302509473027226E06829182
chr117302730473027643E06831392
chr117302774473027851E06831832
chr117302814773028391E06832235
chr117302845773028741E06832545
chr117302875073029221E06832838
chr117302931173029365E06833399
chr117302947873029570E06833566
chr117302963273029725E06833720
chr117302973373029805E06833821
chr117302981173029868E06833899
chr117302988973030007E06833977
chr117303001373030075E06834101
chr117303060773030657E06834695
chr117303077373030844E06834861
chr117303095573031008E06835043
chr117303102373031109E06835111
chr117303193273032532E06836020
chr117303256073034189E06836648
chr117303421573035234E06838303
chr117303523673035433E06839324
chr117303559873035642E06839686
chr117303585473036024E06839942
chr117303787673037931E06841964
chr117303796173038078E06842049
chr117303808073038183E06842168
chr117303819073039038E06842278
chr117304145073041603E06845538
chr117304169673043417E06845784
chr117304462473044687E06848712
chr117295112072951672E069-44240
chr117295168372951898E069-44014
chr117296931772969392E069-26520
chr117300099573001100E0695083
chr117301714273018017E06921230
chr117302509473027226E06929182
chr117302730473027643E06931392
chr117302774473027851E06931832
chr117302814773028391E06932235
chr117302845773028741E06932545
chr117302875073029221E06932838
chr117302931173029365E06933399
chr117302947873029570E06933566
chr117302963273029725E06933720
chr117302973373029805E06933821
chr117302981173029868E06933899
chr117302988973030007E06933977
chr117303001373030075E06934101
chr117303060773030657E06934695
chr117303077373030844E06934861
chr117303095573031008E06935043
chr117303193273032532E06936020
chr117303256073034189E06936648
chr117303421573035234E06938303
chr117303523673035433E06939324
chr117303559873035642E06939686
chr117303611773037003E06940205
chr117303819073039038E06942278
chr117304145073041603E06945538
chr117304169673043417E06945784
chr117295321372954219E070-41693
chr117295559372955664E070-40248
chr117295571972956301E070-39611
chr117295632572956909E070-39003
chr117295696172957130E070-38782
chr117299832472998421E0702412
chr117299845372998545E0702541
chr117299861872998736E0702706
chr117299882172998936E0702909
chr117299896872999121E0703056
chr117302509473027226E07029182
chr117302730473027643E07031392
chr117302774473027851E07031832
chr117302814773028391E07032235
chr117302875073029221E07032838
chr117303256073034189E07036648
chr117303421573035234E07038303
chr117303523673035433E07039324
chr117304145073041603E07045538
chr117295168372951898E071-44014
chr117295196572952099E071-43813
chr117296931772969392E071-26520
chr117296942172969530E071-26382
chr117296961272969662E071-26250
chr117299845372998545E0712541
chr117299914372999649E0713231
chr117299966473000954E0713752
chr117301714273018017E07121230
chr117302730473027643E07131392
chr117302774473027851E07131832
chr117302814773028391E07132235
chr117302845773028741E07132545
chr117302875073029221E07132838
chr117302931173029365E07133399
chr117302947873029570E07133566
chr117302963273029725E07133720
chr117302973373029805E07133821
chr117302981173029868E07133899
chr117302988973030007E07133977
chr117303001373030075E07134101
chr117303060773030657E07134695
chr117303077373030844E07134861
chr117303095573031008E07135043
chr117303102373031109E07135111
chr117303123173031295E07135319
chr117303193273032532E07136020
chr117303256073034189E07136648
chr117303421573035234E07138303
chr117303523673035433E07139324
chr117303559873035642E07139686
chr117303585473036024E07139942
chr117303611773037003E07140205
chr117303716373037236E07141251
chr117304087473040971E07144962
chr117304111873041387E07145206
chr117304145073041603E07145538
chr117304169673043417E07145784
chr117304342073044224E07147508
chr117304462473044687E07148712
chr117296931772969392E072-26520
chr117296942172969530E072-26382
chr117299966473000954E0723752
chr117300099573001100E0725083
chr117302509473027226E07229182
chr117302730473027643E07231392
chr117302774473027851E07231832
chr117302814773028391E07232235
chr117302845773028741E07232545
chr117302875073029221E07232838
chr117302931173029365E07233399
chr117302947873029570E07233566
chr117303174973031889E07235837
chr117303193273032532E07236020
chr117303256073034189E07236648
chr117303421573035234E07238303
chr117303523673035433E07239324
chr117303559873035642E07239686
chr117303585473036024E07239942
chr117303611773037003E07240205
chr117303716373037236E07241251
chr117303787673037931E07241964
chr117303796173038078E07242049
chr117303808073038183E07242168
chr117303819073039038E07242278
chr117295112072951672E073-44240
chr117295168372951898E073-44014
chr117298271372983652E073-12260
chr117300099573001100E0735083
chr117302509473027226E07329182
chr117302730473027643E07331392
chr117302774473027851E07331832
chr117302814773028391E07332235
chr117302845773028741E07332545
chr117302875073029221E07332838
chr117302931173029365E07333399
chr117302947873029570E07333566
chr117302963273029725E07333720
chr117302973373029805E07333821
chr117302981173029868E07333899
chr117302988973030007E07333977
chr117303001373030075E07334101
chr117303060773030657E07334695
chr117303077373030844E07334861
chr117303095573031008E07335043
chr117303102373031109E07335111
chr117303123173031295E07335319
chr117303174973031889E07335837
chr117303193273032532E07336020
chr117303256073034189E07336648
chr117303421573035234E07338303
chr117303523673035433E07339324
chr117303559873035642E07339686
chr117303585473036024E07339942
chr117303611773037003E07340205
chr117303716373037236E07341251
chr117303787673037931E07341964
chr117303796173038078E07342049
chr117303808073038183E07342168
chr117304169673043417E07345784
chr117304423873044570E07348326
chr117304462473044687E07348712
chr117295321372954219E074-41693
chr117296834572969315E074-26597
chr117296931772969392E074-26520
chr117296942172969530E074-26382
chr117299882172998936E0742909
chr117299966473000954E0743752
chr117300099573001100E0745083
chr117302509473027226E07429182
chr117302730473027643E07431392
chr117302774473027851E07431832
chr117302814773028391E07432235
chr117302845773028741E07432545
chr117302875073029221E07432838
chr117302931173029365E07433399
chr117302947873029570E07433566
chr117302963273029725E07433720
chr117302973373029805E07433821
chr117302981173029868E07433899
chr117302988973030007E07433977
chr117303001373030075E07434101
chr117303060773030657E07434695
chr117303077373030844E07434861
chr117303095573031008E07435043
chr117303102373031109E07435111
chr117303123173031295E07435319
chr117303256073034189E07436648
chr117303421573035234E07438303
chr117303523673035433E07439324
chr117303559873035642E07439686
chr117303585473036024E07439942
chr117303611773037003E07440205
chr117303716373037236E07441251
chr117303787673037931E07441964
chr117303796173038078E07442049
chr117303808073038183E07442168
chr117303819073039038E07442278
chr117304145073041603E07445538
chr117304169673043417E07445784
chr117295321372954219E081-41693
chr117298410972984669E081-11243
chr117302509473027226E08129182
chr117302730473027643E08131392
chr117302774473027851E08131832
chr117302814773028391E08132235
chr117302845773028741E08132545
chr117302875073029221E08132838
chr117302931173029365E08133399
chr117302947873029570E08133566
chr117303256073034189E08136648
chr117303421573035234E08138303
chr117302509473027226E08229182
chr117302730473027643E08231392
chr117302814773028391E08232235
chr117302845773028741E08232545
chr117302875073029221E08232838
chr117302931173029365E08233399
chr117302947873029570E08233566
chr117302963273029725E08233720
chr117302973373029805E08233821
chr117302981173029868E08233899
chr117302988973030007E08233977
chr117303001373030075E08234101
chr117303256073034189E08236648










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr117301802073021777E06722108
chr117301802073021777E06822108
chr117301802073021777E06922108
chr117301802073021777E07022108
chr117298391772983981E071-11931
chr117301802073021777E07122108
chr117301802073021777E07222108
chr117301802073021777E07322108
chr117301802073021777E07422108
chr117301802073021777E08222108