rs1826907

Homo sapiens
A>C
LOC102723576 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0133 (4003/29952,GnomAD)
C=0116 (3403/29118,TOPMED)
C=0129 (647/5008,1000G)
C=0117 (452/3854,ALSPAC)
C=0124 (459/3708,TWINSUK)
chr4:99379969 (GRCh38.p7) (4q23)
AD
GWASCatalog
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 4NC_000004.12:g.99379969A>C
GRCh37.p13 chr 4NC_000004.11:g.100301126A>C

Gene: LOC102723576, uncharacterized LOC102723576(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC102723576 transcript variant X2XR_939020.2:n.N/AIntron Variant
LOC102723576 transcript variant X3XR_001741777.1:n.N/AGenic Downstream Transcript Variant
LOC102723576 transcript variant X1XR_427569.3:n.N/AGenic Downstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.881C=0.119
1000GenomesAmericanSub694A=0.850C=0.150
1000GenomesEast AsianSub1008A=0.829C=0.171
1000GenomesEuropeSub1006A=0.883C=0.117
1000GenomesGlobalStudy-wide5008A=0.871C=0.129
1000GenomesSouth AsianSub978A=0.900C=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.883C=0.117
The Genome Aggregation DatabaseAfricanSub8726A=0.866C=0.134
The Genome Aggregation DatabaseAmericanSub838A=0.870C=0.130
The Genome Aggregation DatabaseEast AsianSub1620A=0.860C=0.140
The Genome Aggregation DatabaseEuropeSub18466A=0.865C=0.134
The Genome Aggregation DatabaseGlobalStudy-wide29952A=0.866C=0.133
The Genome Aggregation DatabaseOtherSub302A=0.970C=0.030
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.883C=0.116
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.876C=0.124
PMID Title Author Journal
24166409Genome-wide association study of alcohol dependence:significant findings in African- and European-Americans including novel risk loci.Gelernter JMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs18269073E-07alcohol dependence24166409

eQTL of rs1826907 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1826907 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.