rs1844895

Homo sapiens
C>T
MAGEA10-MAGEA5 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
C==0253 (5238/20679,GnomAD)
C==0270 (1018/3775,1000G)
C==0181 (670/3708,TWINSUK)
C==0179 (517/2889,ALSPAC)
chrX:152132250 (GRCh38.p7) (Xq28)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.152132250C>T
GRCh37.p13 chr XNC_000023.10:g.151300722C>T

Gene: MAGEA10-MAGEA5, MAGEA10-MAGEA5 readthrough(minus strand)

Molecule type Change Amino acid[Codon] SO Term
MAGEA10-MAGEA5 transcriptNM_001204811.2:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1003C=0.519T=0.481
1000GenomesAmericanSub524C=0.250T=0.750
1000GenomesEast AsianSub764C=0.090T=0.910
1000GenomesEuropeSub766C=0.190T=0.810
1000GenomesGlobalStudy-wide3775C=0.270T=0.730
1000GenomesSouth AsianSub718C=0.210T=0.790
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide2889C=0.179T=0.821
The Genome Aggregation DatabaseAfricanSub5790C=0.453T=0.547
The Genome Aggregation DatabaseAmericanSub616C=0.230T=0.770
The Genome Aggregation DatabaseEast AsianSub1034C=0.075T=0.925
The Genome Aggregation DatabaseEuropeSub13056C=0.182T=0.817
The Genome Aggregation DatabaseGlobalStudy-wide20679C=0.253T=0.746
The Genome Aggregation DatabaseOtherSub183C=0.090T=0.910
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.181T=0.819
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs18448950.00085alcohol dependence20201924

eQTL of rs1844895 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1844895 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.