rs184729

Homo sapiens
A>C / A>T
LOC105370324 : Intron Variant
LOC105370325 : 2KB Upstream Variant
Check p-value
SNV (Single Nucleotide Variation)
C=0315 (9438/29920,GnomAD)
C=0307 (8942/29118,TOPMED)
C=0353 (1768/5008,1000G)
C=0285 (1099/3854,ALSPAC)
C=0297 (1100/3708,TWINSUK)
chr13:97540481 (GRCh38.p7) (13q32.2)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 13NC_000013.11:g.97540481A>C
GRCh38.p7 chr 13NC_000013.11:g.97540481A>T
GRCh37.p13 chr 13NC_000013.10:g.98192735A>C
GRCh37.p13 chr 13NC_000013.10:g.98192735A>T

Gene: LOC105370324, uncharacterized LOC105370324(minus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC105370324 transcript variant X1XR_931663.2:n.N/AIntron Variant
LOC105370324 transcript variant X2XR_931664.2:n.N/AIntron Variant

Gene: LOC105370325, uncharacterized LOC105370325(plus strand): 2KB Upstream Variant

Molecule type Change Amino acid[Codon] SO Term
LOC105370325 transcriptXR_001749969.1:n.N/AUpstream Transcript Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.632C=0.368
1000GenomesAmericanSub694A=0.710C=0.290
1000GenomesEast AsianSub1008A=0.455C=0.545
1000GenomesEuropeSub1006A=0.743C=0.257
1000GenomesGlobalStudy-wide5008A=0.647C=0.353
1000GenomesSouth AsianSub978A=0.720C=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.715C=0.285
The Genome Aggregation DatabaseAfricanSub8704A=0.632C=0.368
The Genome Aggregation DatabaseAmericanSub836A=0.740C=0.260
The Genome Aggregation DatabaseEast AsianSub1618A=0.464C=0.536
The Genome Aggregation DatabaseEuropeSub18460A=0.724C=0.275
The Genome Aggregation DatabaseGlobalStudy-wide29920A=0.684C=0.315
The Genome Aggregation DatabaseOtherSub302A=0.770C=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.692C=0.307
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.703C=0.297
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs1847290.000755alcohol dependence21314694

eQTL of rs184729 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs184729 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.