rs1855065

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0072 (2173/29922,GnomAD)
G=0085 (2474/29118,TOPMED)
G=0099 (498/5008,1000G)
G=0024 (91/3854,ALSPAC)
G=0025 (92/3708,TWINSUK)
chr9:91473095 (GRCh38.p7) (9q22.31)
AD
GWASdb2
1   publication(s)
See rs on genome
26 Enhancers around
7 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.91473095T>G
GRCh37.p13 chr 9NC_000009.11:g.94235377T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.815G=0.185
1000GenomesAmericanSub694T=0.970G=0.030
1000GenomesEast AsianSub1008T=0.841G=0.159
1000GenomesEuropeSub1006T=0.978G=0.022
1000GenomesGlobalStudy-wide5008T=0.901G=0.099
1000GenomesSouth AsianSub978T=0.950G=0.050
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.976G=0.024
The Genome Aggregation DatabaseAfricanSub8710T=0.842G=0.158
The Genome Aggregation DatabaseAmericanSub838T=0.970G=0.030
The Genome Aggregation DatabaseEast AsianSub1612T=0.829G=0.171
The Genome Aggregation DatabaseEuropeSub18460T=0.973G=0.026
The Genome Aggregation DatabaseGlobalStudy-wide29922T=0.927G=0.072
The Genome Aggregation DatabaseOtherSub302T=0.960G=0.040
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.915G=0.085
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.975G=0.025
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs18550650.0000428alcoholismpha002891
rs18550650.0000428alcohol dependence20201924

eQTL of rs1855065 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1855065 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr99424614994246455E06710772
chr99425117994251239E06715802
chr99425153694252118E06716159
chr99424509994246112E0699722
chr99424614994246455E06910772
chr99425117994251239E06915802
chr99425153694252118E06916159
chr99425214194252370E06916764
chr99423932594239480E0713948
chr99423951394239854E0714136
chr99425117994251239E07115802
chr99425153694252118E07116159
chr99425214194252370E07116764
chr99424509994246112E0729722
chr99424614994246455E07210772
chr99425153694252118E07216159
chr99425214194252370E07216764
chr99424509994246112E0739722
chr99423932594239480E0743948
chr99423951394239854E0744136
chr99425153694252118E07416159
chr99425214194252370E07416764
chr99419119394191687E081-43690
chr99419189994192117E081-43260
chr99419217894192218E081-43159
chr99419119394191687E082-43690








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr99427728594277924E06741908
chr99427728594277924E06841908
chr99427728594277924E06941908
chr99427728594277924E07141908
chr99427728594277924E07241908
chr99427728594277924E07341908
chr99427728594277924E07441908