SNP Detail Info-rs1855480

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

LOC105370301 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0147 (4405/29952,GnomAD)
G=0184 (5384/29118,TOPMED)
G=0146 (731/5008,1000G)
G=0106 (410/3854,ALSPAC)
G=0103 (383/3708,TWINSUK)

Position: chr13:87047292 (GRCh38.p7) (13q31.1)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 13	NC_000013.11:g.87047292A>G
GRCh37.p13 chr 13	NC_000013.10:g.87699547A>G

Molecule type	Change	Amino acid[Codon]	SO Term
LOC105370301 transcript variant X1	XR_931623.2:n.	N/A	Intron Variant
LOC105370301 transcript variant X2	XR_931624.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.666	G=0.334
1000Genomes	American	Sub	694	A=0.900	G=0.100
1000Genomes	East Asian	Sub	1008	A=0.969	G=0.031
1000Genomes	Europe	Sub	1006	A=0.906	G=0.094
1000Genomes	Global	Study-wide	5008	A=0.854	G=0.146
1000Genomes	South Asian	Sub	978	A=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.894	G=0.106
The Genome Aggregation Database	African	Sub	8704	A=0.698	G=0.302
The Genome Aggregation Database	American	Sub	838	A=0.930	G=0.070
The Genome Aggregation Database	East Asian	Sub	1622	A=0.954	G=0.046
The Genome Aggregation Database	Europe	Sub	18486	A=0.913	G=0.086
The Genome Aggregation Database	Global	Study-wide	29952	A=0.852	G=0.147
The Genome Aggregation Database	Other	Sub	302	A=0.840	G=0.160
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.815	G=0.184
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.897	G=0.103

PMID	Title	Author	Journal
23743675	A meta-analysis of two genome-wide association studies to identify novel loci for maximum number of alcoholic drinks.	Kapoor M	Hum Genet

SNP ID	p-value	Traits	Study
rs1855480	0.000105	alcohol consumption	23743675

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
Chr13:87699547	SLITRK5	ENSG00000165300.6	A>G	7.2166e-3	-625323	Cerebellar_Hemisphere

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1855480