Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.110632404G>T |
GRCh37.p13 chr 10 | NC_000010.10:g.112392162G>T |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.821 | T=0.179 |
1000Genomes | American | Sub | 694 | G=0.900 | T=0.100 |
1000Genomes | East Asian | Sub | 1008 | G=0.829 | T=0.171 |
1000Genomes | Europe | Sub | 1006 | G=0.895 | T=0.105 |
1000Genomes | Global | Study-wide | 5008 | G=0.851 | T=0.149 |
1000Genomes | South Asian | Sub | 978 | G=0.830 | T=0.170 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.881 | T=0.119 |
The Genome Aggregation Database | African | Sub | 8714 | G=0.828 | T=0.172 |
The Genome Aggregation Database | American | Sub | 838 | G=0.910 | T=0.090 |
The Genome Aggregation Database | East Asian | Sub | 1616 | G=0.840 | T=0.160 |
The Genome Aggregation Database | Europe | Sub | 18494 | G=0.884 | T=0.115 |
The Genome Aggregation Database | Global | Study-wide | 29962 | G=0.866 | T=0.133 |
The Genome Aggregation Database | Other | Sub | 300 | G=0.910 | T=0.090 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.854 | T=0.145 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.874 | T=0.126 |
PMID | Title | Author | Journal |
---|---|---|---|
19268276 | Genome-wide association study of smoking initiation and current smoking. | Vink JM | Am J Hum Genet |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1856801 | 3.79E-05 | nicotine smoking | 19268276 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 112439211 | 112440231 | E068 | 47049 |
chr10 | 112368701 | 112368868 | E071 | -23294 |
chr10 | 112439211 | 112440231 | E071 | 47049 |
chr10 | 112440252 | 112440609 | E071 | 48090 |
chr10 | 112368701 | 112368868 | E072 | -23294 |
chr10 | 112439211 | 112440231 | E081 | 47049 |
chr10 | 112440252 | 112440609 | E081 | 48090 |
chr10 | 112396479 | 112397874 | E082 | 4317 |
chr10 | 112439211 | 112440231 | E082 | 47049 |
chr10 | 112440252 | 112440609 | E082 | 48090 |
chr10 | 112440652 | 112441201 | E082 | 48490 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr10 | 112431668 | 112432645 | E067 | 39506 |
chr10 | 112401914 | 112404331 | E068 | 9752 |
chr10 | 112404352 | 112405268 | E068 | 12190 |
chr10 | 112431668 | 112432645 | E068 | 39506 |
chr10 | 112401914 | 112404331 | E069 | 9752 |
chr10 | 112431668 | 112432645 | E069 | 39506 |
chr10 | 112431668 | 112432645 | E070 | 39506 |
chr10 | 112401914 | 112404331 | E071 | 9752 |
chr10 | 112404352 | 112405268 | E071 | 12190 |
chr10 | 112431668 | 112432645 | E071 | 39506 |
chr10 | 112401914 | 112404331 | E072 | 9752 |
chr10 | 112404352 | 112405268 | E072 | 12190 |
chr10 | 112431668 | 112432645 | E072 | 39506 |
chr10 | 112401914 | 112404331 | E073 | 9752 |
chr10 | 112404352 | 112405268 | E073 | 12190 |
chr10 | 112431668 | 112432645 | E073 | 39506 |
chr10 | 112431668 | 112432645 | E074 | 39506 |