rs1856801

Homo sapiens
G>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0133 (3997/29962,GnomAD)
T=0145 (4227/29118,TOPMED)
T=0149 (744/5008,1000G)
T=0119 (457/3854,ALSPAC)
T=0126 (467/3708,TWINSUK)
chr10:110632404 (GRCh38.p7) (10q25.2)
ND
GWASdb2
1   publication(s)
See rs on genome
11 Enhancers around
17 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.110632404G>T
GRCh37.p13 chr 10NC_000010.10:g.112392162G>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.821T=0.179
1000GenomesAmericanSub694G=0.900T=0.100
1000GenomesEast AsianSub1008G=0.829T=0.171
1000GenomesEuropeSub1006G=0.895T=0.105
1000GenomesGlobalStudy-wide5008G=0.851T=0.149
1000GenomesSouth AsianSub978G=0.830T=0.170
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.881T=0.119
The Genome Aggregation DatabaseAfricanSub8714G=0.828T=0.172
The Genome Aggregation DatabaseAmericanSub838G=0.910T=0.090
The Genome Aggregation DatabaseEast AsianSub1616G=0.840T=0.160
The Genome Aggregation DatabaseEuropeSub18494G=0.884T=0.115
The Genome Aggregation DatabaseGlobalStudy-wide29962G=0.866T=0.133
The Genome Aggregation DatabaseOtherSub300G=0.910T=0.090
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.854T=0.145
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.874T=0.126
PMID Title Author Journal
19268276Genome-wide association study of smoking initiation and current smoking.Vink JMAm J Hum Genet

P-Value

SNP ID p-value Traits Study
rs18568013.79E-05nicotine smoking19268276

eQTL of rs1856801 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1856801 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10112439211112440231E06847049
chr10112368701112368868E071-23294
chr10112439211112440231E07147049
chr10112440252112440609E07148090
chr10112368701112368868E072-23294
chr10112439211112440231E08147049
chr10112440252112440609E08148090
chr10112396479112397874E0824317
chr10112439211112440231E08247049
chr10112440252112440609E08248090
chr10112440652112441201E08248490





Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr10112431668112432645E06739506
chr10112401914112404331E0689752
chr10112404352112405268E06812190
chr10112431668112432645E06839506
chr10112401914112404331E0699752
chr10112431668112432645E06939506
chr10112431668112432645E07039506
chr10112401914112404331E0719752
chr10112404352112405268E07112190
chr10112431668112432645E07139506
chr10112401914112404331E0729752
chr10112404352112405268E07212190
chr10112431668112432645E07239506
chr10112401914112404331E0739752
chr10112404352112405268E07312190
chr10112431668112432645E07339506
chr10112431668112432645E07439506