SNP Detail Info-rs1868616

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

GRM7 : Intron Variant

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0181 (5443/29952,GnomAD)
G=0169 (4920/29118,TOPMED)
G=0202 (1014/5008,1000G)
G=0182 (703/3854,ALSPAC)
G=0182 (675/3708,TWINSUK)

Position: chr3:7463800 (GRCh38.p7) (3p26.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 0 Enhancer around

Promoter: 0 Promoter around

Molecule type	Change	Amino acid[Codon]	SO Term
GRM7 transcript variant 1	NM_000844.3:c.	N/A	Intron Variant
GRM7 transcript variant 2	NM_181874.2:c.	N/A	Intron Variant
GRM7 transcript variant X5	XM_017006272.1:c.	N/A	Intron Variant
GRM7 transcript variant X6	XM_017006273.1:c.	N/A	Intron Variant
GRM7 transcript variant X1	XR_001740134.1:n.	N/A	Intron Variant
GRM7 transcript variant X2	XR_001740135.1:n.	N/A	Intron Variant
GRM7 transcript variant X3	XR_001740136.1:n.	N/A	Intron Variant
GRM7 transcript variant X4	XR_001740137.1:n.	N/A	Intron Variant

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.850	G=0.150
1000Genomes	American	Sub	694	A=0.850	G=0.150
1000Genomes	East Asian	Sub	1008	A=0.865	G=0.135
1000Genomes	Europe	Sub	1006	A=0.805	G=0.195
1000Genomes	Global	Study-wide	5008	A=0.798	G=0.202
1000Genomes	South Asian	Sub	978	A=0.610	G=0.390
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.818	G=0.182
The Genome Aggregation Database	African	Sub	8702	A=0.845	G=0.155
The Genome Aggregation Database	American	Sub	838	A=0.830	G=0.170
The Genome Aggregation Database	East Asian	Sub	1616	A=0.897	G=0.103
The Genome Aggregation Database	Europe	Sub	18494	A=0.798	G=0.201
The Genome Aggregation Database	Global	Study-wide	29952	A=0.818	G=0.181
The Genome Aggregation Database	Other	Sub	302	A=0.780	G=0.220
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.831	G=0.169
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.818	G=0.182

PMID	Title	Author	Journal
19268276	Genome-wide association study of smoking initiation and current smoking.	Vink JM	Am J Hum Genet

SNP ID	p-value	Traits	Study
rs1868616	0.000368	nicotine smoking	19268276

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1868616