Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 12 | NC_000012.12:g.117037373T>C |
GRCh37.p13 chr 12 | NC_000012.11:g.117475178T>C |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | T=0.035 | C=0.965 |
1000Genomes | American | Sub | 694 | T=0.530 | C=0.470 |
1000Genomes | East Asian | Sub | 1008 | T=0.438 | C=0.562 |
1000Genomes | Europe | Sub | 1006 | T=0.415 | C=0.585 |
1000Genomes | Global | Study-wide | 5008 | T=0.317 | C=0.683 |
1000Genomes | South Asian | Sub | 978 | T=0.320 | C=0.680 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | T=0.412 | C=0.588 |
The Genome Aggregation Database | African | Sub | 8706 | T=0.088 | C=0.912 |
The Genome Aggregation Database | American | Sub | 836 | T=0.520 | C=0.480 |
The Genome Aggregation Database | East Asian | Sub | 1608 | T=0.430 | C=0.570 |
The Genome Aggregation Database | Europe | Sub | 18446 | T=0.416 | C=0.583 |
The Genome Aggregation Database | Global | Study-wide | 29898 | T=0.323 | C=0.676 |
The Genome Aggregation Database | Other | Sub | 302 | T=0.310 | C=0.690 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | T=0.257 | C=0.742 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | T=0.410 | C=0.590 |
PMID | Title | Author | Journal |
---|---|---|---|
21703634 | A meta-analysis of two genome-wide association studies identifies 3 new loci for alcohol dependence. | Wang KS | J Psychiatr Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1875144 | 9.37E-05 | alcohol dependence | 21703634 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr12 | 117434488 | 117434809 | E067 | -40369 |
chr12 | 117439678 | 117440525 | E067 | -34653 |
chr12 | 117463151 | 117463999 | E067 | -11179 |
chr12 | 117464281 | 117464606 | E067 | -10572 |
chr12 | 117470313 | 117471198 | E067 | -3980 |
chr12 | 117472535 | 117472715 | E067 | -2463 |
chr12 | 117482675 | 117484184 | E067 | 7497 |
chr12 | 117499018 | 117499068 | E067 | 23840 |
chr12 | 117449848 | 117449904 | E068 | -25274 |
chr12 | 117449952 | 117450040 | E068 | -25138 |
chr12 | 117450136 | 117450543 | E068 | -24635 |
chr12 | 117463151 | 117463999 | E068 | -11179 |
chr12 | 117470313 | 117471198 | E068 | -3980 |
chr12 | 117475558 | 117475682 | E068 | 380 |
chr12 | 117475712 | 117475773 | E068 | 534 |
chr12 | 117475829 | 117475879 | E068 | 651 |
chr12 | 117475914 | 117475969 | E068 | 736 |
chr12 | 117476087 | 117476179 | E068 | 909 |
chr12 | 117477826 | 117477918 | E068 | 2648 |
chr12 | 117482675 | 117484184 | E068 | 7497 |
chr12 | 117484194 | 117484350 | E068 | 9016 |
chr12 | 117486768 | 117487240 | E068 | 11590 |
chr12 | 117487321 | 117487398 | E068 | 12143 |
chr12 | 117488739 | 117489135 | E068 | 13561 |
chr12 | 117489190 | 117489749 | E068 | 14012 |
chr12 | 117496692 | 117496829 | E068 | 21514 |
chr12 | 117496868 | 117496988 | E068 | 21690 |
chr12 | 117496996 | 117497095 | E068 | 21818 |
chr12 | 117497103 | 117497232 | E068 | 21925 |
chr12 | 117497266 | 117497342 | E068 | 22088 |
chr12 | 117497934 | 117497994 | E068 | 22756 |
chr12 | 117499018 | 117499068 | E068 | 23840 |
chr12 | 117499210 | 117499407 | E068 | 24032 |
chr12 | 117499431 | 117499481 | E068 | 24253 |
chr12 | 117499510 | 117499662 | E068 | 24332 |
chr12 | 117499698 | 117499797 | E068 | 24520 |
chr12 | 117499823 | 117499873 | E068 | 24645 |
chr12 | 117500375 | 117500453 | E068 | 25197 |
chr12 | 117500461 | 117501790 | E068 | 25283 |
chr12 | 117505577 | 117505677 | E068 | 30399 |
chr12 | 117514686 | 117515217 | E068 | 39508 |
chr12 | 117522362 | 117522584 | E068 | 47184 |
chr12 | 117522635 | 117522725 | E068 | 47457 |
chr12 | 117522970 | 117523079 | E068 | 47792 |
chr12 | 117523367 | 117523498 | E068 | 48189 |
chr12 | 117523609 | 117523679 | E068 | 48431 |
chr12 | 117523889 | 117523933 | E068 | 48711 |
chr12 | 117524675 | 117524914 | E068 | 49497 |
chr12 | 117524962 | 117525070 | E068 | 49784 |
chr12 | 117434488 | 117434809 | E069 | -40369 |
chr12 | 117470313 | 117471198 | E069 | -3980 |
chr12 | 117482675 | 117484184 | E069 | 7497 |
chr12 | 117499018 | 117499068 | E069 | 23840 |
chr12 | 117499210 | 117499407 | E069 | 24032 |
chr12 | 117500375 | 117500453 | E069 | 25197 |
chr12 | 117436039 | 117436177 | E070 | -39001 |
chr12 | 117439378 | 117439565 | E070 | -35613 |
chr12 | 117439678 | 117440525 | E070 | -34653 |
chr12 | 117440565 | 117440696 | E070 | -34482 |
chr12 | 117440876 | 117441225 | E070 | -33953 |
chr12 | 117441418 | 117441586 | E070 | -33592 |
chr12 | 117441659 | 117441760 | E070 | -33418 |
chr12 | 117441778 | 117441834 | E070 | -33344 |
chr12 | 117441907 | 117441970 | E070 | -33208 |
chr12 | 117442365 | 117442470 | E070 | -32708 |
chr12 | 117447635 | 117447991 | E070 | -27187 |
chr12 | 117448049 | 117448126 | E070 | -27052 |
chr12 | 117448136 | 117448258 | E070 | -26920 |
chr12 | 117448312 | 117448399 | E070 | -26779 |
chr12 | 117448606 | 117448712 | E070 | -26466 |
chr12 | 117448728 | 117448873 | E070 | -26305 |
chr12 | 117456934 | 117456988 | E070 | -18190 |
chr12 | 117457233 | 117457293 | E070 | -17885 |
chr12 | 117457964 | 117458024 | E070 | -17154 |
chr12 | 117458116 | 117458166 | E070 | -17012 |
chr12 | 117458171 | 117458294 | E070 | -16884 |
chr12 | 117458478 | 117458528 | E070 | -16650 |
chr12 | 117458586 | 117458956 | E070 | -16222 |
chr12 | 117459650 | 117459759 | E070 | -15419 |
chr12 | 117459947 | 117460000 | E070 | -15178 |
chr12 | 117460206 | 117460288 | E070 | -14890 |
chr12 | 117460310 | 117460379 | E070 | -14799 |
chr12 | 117463151 | 117463999 | E070 | -11179 |
chr12 | 117470313 | 117471198 | E070 | -3980 |
chr12 | 117472535 | 117472715 | E070 | -2463 |
chr12 | 117472762 | 117472885 | E070 | -2293 |
chr12 | 117473150 | 117473267 | E070 | -1911 |
chr12 | 117473269 | 117473373 | E070 | -1805 |
chr12 | 117473397 | 117473484 | E070 | -1694 |
chr12 | 117478562 | 117478732 | E070 | 3384 |
chr12 | 117482675 | 117484184 | E070 | 7497 |
chr12 | 117484194 | 117484350 | E070 | 9016 |
chr12 | 117484464 | 117484524 | E070 | 9286 |
chr12 | 117489834 | 117489950 | E070 | 14656 |
chr12 | 117490173 | 117490282 | E070 | 14995 |
chr12 | 117490288 | 117490315 | E070 | 15110 |
chr12 | 117490321 | 117490488 | E070 | 15143 |
chr12 | 117490602 | 117490758 | E070 | 15424 |
chr12 | 117496692 | 117496829 | E070 | 21514 |
chr12 | 117496868 | 117496988 | E070 | 21690 |
chr12 | 117496996 | 117497095 | E070 | 21818 |
chr12 | 117497103 | 117497232 | E070 | 21925 |
chr12 | 117497266 | 117497342 | E070 | 22088 |
chr12 | 117497934 | 117497994 | E070 | 22756 |
chr12 | 117498136 | 117498926 | E070 | 22958 |
chr12 | 117448606 | 117448712 | E071 | -26466 |
chr12 | 117448728 | 117448873 | E071 | -26305 |
chr12 | 117470102 | 117470303 | E071 | -4875 |
chr12 | 117482675 | 117484184 | E071 | 7497 |
chr12 | 117484194 | 117484350 | E071 | 9016 |
chr12 | 117486360 | 117486669 | E071 | 11182 |
chr12 | 117498136 | 117498926 | E071 | 22958 |
chr12 | 117523367 | 117523498 | E071 | 48189 |
chr12 | 117434488 | 117434809 | E072 | -40369 |
chr12 | 117435017 | 117435150 | E072 | -40028 |
chr12 | 117435182 | 117435276 | E072 | -39902 |
chr12 | 117463151 | 117463999 | E072 | -11179 |
chr12 | 117470313 | 117471198 | E072 | -3980 |
chr12 | 117472535 | 117472715 | E072 | -2463 |
chr12 | 117476907 | 117477030 | E072 | 1729 |
chr12 | 117477156 | 117477260 | E072 | 1978 |
chr12 | 117477394 | 117477434 | E072 | 2216 |
chr12 | 117477826 | 117477918 | E072 | 2648 |
chr12 | 117482675 | 117484184 | E072 | 7497 |
chr12 | 117498136 | 117498926 | E072 | 22958 |
chr12 | 117522006 | 117522163 | E072 | 46828 |
chr12 | 117522970 | 117523079 | E072 | 47792 |
chr12 | 117523367 | 117523498 | E072 | 48189 |
chr12 | 117524675 | 117524914 | E072 | 49497 |
chr12 | 117463151 | 117463999 | E073 | -11179 |
chr12 | 117475829 | 117475879 | E073 | 651 |
chr12 | 117475914 | 117475969 | E073 | 736 |
chr12 | 117476087 | 117476179 | E073 | 909 |
chr12 | 117477826 | 117477918 | E073 | 2648 |
chr12 | 117482675 | 117484184 | E073 | 7497 |
chr12 | 117498136 | 117498926 | E073 | 22958 |
chr12 | 117499018 | 117499068 | E073 | 23840 |
chr12 | 117499210 | 117499407 | E073 | 24032 |
chr12 | 117499431 | 117499481 | E073 | 24253 |
chr12 | 117499510 | 117499662 | E073 | 24332 |
chr12 | 117429211 | 117429907 | E074 | -45271 |
chr12 | 117434488 | 117434809 | E074 | -40369 |
chr12 | 117437035 | 117437085 | E074 | -38093 |
chr12 | 117437496 | 117437607 | E074 | -37571 |
chr12 | 117439678 | 117440525 | E074 | -34653 |
chr12 | 117463151 | 117463999 | E074 | -11179 |
chr12 | 117498136 | 117498926 | E074 | 22958 |
chr12 | 117499018 | 117499068 | E074 | 23840 |
chr12 | 117502184 | 117502344 | E074 | 27006 |
chr12 | 117439678 | 117440525 | E081 | -34653 |
chr12 | 117456934 | 117456988 | E081 | -18190 |
chr12 | 117457233 | 117457293 | E081 | -17885 |
chr12 | 117457964 | 117458024 | E081 | -17154 |
chr12 | 117458116 | 117458166 | E081 | -17012 |
chr12 | 117458171 | 117458294 | E081 | -16884 |
chr12 | 117458478 | 117458528 | E081 | -16650 |
chr12 | 117463151 | 117463999 | E081 | -11179 |
chr12 | 117472535 | 117472715 | E081 | -2463 |
chr12 | 117472762 | 117472885 | E081 | -2293 |
chr12 | 117473150 | 117473267 | E081 | -1911 |
chr12 | 117482675 | 117484184 | E081 | 7497 |
chr12 | 117484194 | 117484350 | E081 | 9016 |
chr12 | 117484464 | 117484524 | E081 | 9286 |
chr12 | 117488314 | 117488602 | E081 | 13136 |
chr12 | 117488739 | 117489135 | E081 | 13561 |
chr12 | 117491685 | 117491885 | E081 | 16507 |
chr12 | 117497934 | 117497994 | E081 | 22756 |
chr12 | 117498136 | 117498926 | E081 | 22958 |
chr12 | 117499018 | 117499068 | E081 | 23840 |
chr12 | 117439678 | 117440525 | E082 | -34653 |
chr12 | 117440565 | 117440696 | E082 | -34482 |
chr12 | 117440876 | 117441225 | E082 | -33953 |
chr12 | 117456934 | 117456988 | E082 | -18190 |
chr12 | 117457233 | 117457293 | E082 | -17885 |
chr12 | 117472535 | 117472715 | E082 | -2463 |
chr12 | 117472762 | 117472885 | E082 | -2293 |
chr12 | 117474386 | 117474464 | E082 | -714 |
chr12 | 117474480 | 117474540 | E082 | -638 |
chr12 | 117482675 | 117484184 | E082 | 7497 |
chr12 | 117484194 | 117484350 | E082 | 9016 |
chr12 | 117490288 | 117490315 | E082 | 15110 |
chr12 | 117497934 | 117497994 | E082 | 22756 |
chr12 | 117498136 | 117498926 | E082 | 22958 |
Chromosome | Start | End | Region | Distance(-/+:Up/Downstream) |
---|---|---|---|---|
chr12 | 117433936 | 117434295 | E067 | -40883 |
chr12 | 117434350 | 117434443 | E067 | -40735 |
chr12 | 117433936 | 117434295 | E068 | -40883 |
chr12 | 117433936 | 117434295 | E071 | -40883 |
chr12 | 117434350 | 117434443 | E071 | -40735 |
chr12 | 117433936 | 117434295 | E072 | -40883 |
chr12 | 117434350 | 117434443 | E072 | -40735 |
chr12 | 117433936 | 117434295 | E074 | -40883 |
chr12 | 117434350 | 117434443 | E074 | -40735 |