rs1883339

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0212 (6370/29958,GnomAD)
A=0290 (8458/29118,TOPMED)
A=0238 (1194/5008,1000G)
A=0043 (165/3854,ALSPAC)
A=0049 (183/3708,TWINSUK)
chr6:132279845 (GRCh38.p7) (6q23.2)
AD
GWASdb2
1   publication(s)
See rs on genome
9 Enhancers around
8 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 6NC_000006.12:g.132279845G>A
GRCh37.p13 chr 6NC_000006.11:g.132600984G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.328A=0.672
1000GenomesAmericanSub694G=0.910A=0.090
1000GenomesEast AsianSub1008G=0.933A=0.067
1000GenomesEuropeSub1006G=0.947A=0.053
1000GenomesGlobalStudy-wide5008G=0.762A=0.238
1000GenomesSouth AsianSub978G=0.870A=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.957A=0.043
The Genome Aggregation DatabaseAfricanSub8704G=0.405A=0.595
The Genome Aggregation DatabaseAmericanSub838G=0.930A=0.070
The Genome Aggregation DatabaseEast AsianSub1620G=0.942A=0.058
The Genome Aggregation DatabaseEuropeSub18494G=0.944A=0.055
The Genome Aggregation DatabaseGlobalStudy-wide29958G=0.787A=0.212
The Genome Aggregation DatabaseOtherSub302G=0.950A=0.050
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.709A=0.290
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.951A=0.049
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs18833390.00027alcohol dependence20201924

eQTL of rs1883339 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1883339 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr6132601237132601297E068253
chr6132619587132619737E06918603
chr6132618451132618501E07117467
chr6132601237132601297E072253
chr6132567323132568074E081-32910
chr6132598988132599144E081-1840
chr6132598988132599144E082-1840
chr6132610790132610905E0829806
chr6132611046132611145E08210062






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr6132600698132601199E0670
chr6132600698132601199E0680
chr6132600698132601199E0690
chr6132600698132601199E0700
chr6132600698132601199E0710
chr6132600698132601199E0720
chr6132600698132601199E0740
chr6132600698132601199E0820