SNP Detail Info-rs1896785

Organism: Homo sapiens

Alleles: A>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0120 (3603/29926,GnomAD)
G=0129 (3765/29118,TOPMED)
G=0124 (620/5008,1000G)
G=0088 (341/3854,ALSPAC)
G=0096 (355/3708,TWINSUK)

Position: chr5:9987622 (GRCh38.p7) (5p15.2)

Phenotype: AD

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 5	NC_000005.10:g.9987622A>G
GRCh37.p13 chr 5	NC_000005.9:g.9987734A>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	A=0.816	G=0.184
1000Genomes	American	Sub	694	A=0.800	G=0.200
1000Genomes	East Asian	Sub	1008	A=0.941	G=0.059
1000Genomes	Europe	Sub	1006	A=0.917	G=0.083
1000Genomes	Global	Study-wide	5008	A=0.876	G=0.124
1000Genomes	South Asian	Sub	978	A=0.900	G=0.100
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	A=0.912	G=0.088
The Genome Aggregation Database	African	Sub	8694	A=0.828	G=0.172
The Genome Aggregation Database	American	Sub	838	A=0.730	G=0.270
The Genome Aggregation Database	East Asian	Sub	1614	A=0.962	G=0.038
The Genome Aggregation Database	Europe	Sub	18478	A=0.902	G=0.097
The Genome Aggregation Database	Global	Study-wide	29926	A=0.879	G=0.120
The Genome Aggregation Database	Other	Sub	302	A=0.940	G=0.060
Trans-Omics for Precision Medicine	Global	Study-wide	29118	A=0.870	G=0.129
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	A=0.904	G=0.096

PMID	Title	Author	Journal
20201924	Genome-wide association study of alcohol dependence implicates a region on chromosome 11.	Edenberg HJ	Alcohol Clin Exp Res

SNP ID	p-value	Traits	Study
rs1896785	0.00034	alcohol dependence(early age of onset)	20201924
rs1896785	0.00054	alcohol dependence	20201924

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1896785