SNP Detail Info-rs1897224

Organism: Homo sapiens

Alleles: T>G

Gene : Feature

None

p-value: Check p-value

Variation Type: SNV (Single Nucleotide Variation)

Frequency:

G=0267 (7999/29948,GnomAD)
G=0259 (7558/29118,TOPMED)
G=0319 (1598/5008,1000G)
G=0284 (1096/3854,ALSPAC)
G=0285 (1058/3708,TWINSUK)

Position: chr14:41332026 (GRCh38.p7) (14q21.1)

Phenotype: ND

Dataset:

GWASdb2

Publications: 1 publication(s)

Genomic View: See rs on genome

Enhancer: 1 Enhancer around

Promoter: 0 Promoter around

Sequence Name	Change(s)
GRCh38.p7 chr 14	NC_000014.9:g.41332026T>G
GRCh37.p13 chr 14	NC_000014.8:g.41801229T>G

Study	Population	Group	Sample #	Ref Allele	Alt Allele
1000Genomes	African	Sub	1322	T=0.796	G=0.204
1000Genomes	American	Sub	694	T=0.720	G=0.280
1000Genomes	East Asian	Sub	1008	T=0.554	G=0.446
1000Genomes	Europe	Sub	1006	T=0.740	G=0.260
1000Genomes	Global	Study-wide	5008	T=0.681	G=0.319
1000Genomes	South Asian	Sub	978	T=0.570	G=0.430
The Avon Longitudinal Study of Parents and Children	PARENT AND CHILD COHORT	Study-wide	3854	T=0.716	G=0.284
The Genome Aggregation Database	African	Sub	8720	T=0.759	G=0.241
The Genome Aggregation Database	American	Sub	836	T=0.730	G=0.270
The Genome Aggregation Database	East Asian	Sub	1612	T=0.567	G=0.433
The Genome Aggregation Database	Europe	Sub	18478	T=0.734	G=0.265
The Genome Aggregation Database	Global	Study-wide	29948	T=0.732	G=0.267
The Genome Aggregation Database	Other	Sub	302	T=0.750	G=0.250
Trans-Omics for Precision Medicine	Global	Study-wide	29118	T=0.740	G=0.259
UK 10K study - Twins	TWIN COHORT	Study-wide	3708	T=0.715	G=0.285

PMID	Title	Author	Journal
17158188	Novel genes identified in a high-density genome wide association study for nicotine dependence.	Bierut LJ	Hum Mol Genet

SNP ID	p-value	Traits	Study
rs1897224	0.000764	nicotine dependence	17158188

Position (v37)	eGene	GeneID	Variant	p-value	TSS	Tissue
There is no eQTL annotation for this SNP

Probe ID	Position	Gene	beta	p-value
There is no meQTL annotation for this SNP

rs1897224