rs1901439

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0136 (4086/29970,GnomAD)
T==0138 (4044/29118,TOPMED)
T==0149 (744/5008,1000G)
T==0186 (715/3854,ALSPAC)
T==0187 (694/3708,TWINSUK)
chr2:133679900 (GRCh38.p7) (2q21.2)
AD
GWASdb2
1   publication(s)
See rs on genome
206 Enhancers around
25 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.133679900T>C
GRCh37.p13 chr 2NC_000002.11:g.134437471T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.016C=0.984
1000GenomesAmericanSub694T=0.210C=0.790
1000GenomesEast AsianSub1008T=0.113C=0.887
1000GenomesEuropeSub1006T=0.193C=0.807
1000GenomesGlobalStudy-wide5008T=0.149C=0.851
1000GenomesSouth AsianSub978T=0.270C=0.730
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.186C=0.814
The Genome Aggregation DatabaseAfricanSub8730T=0.045C=0.955
The Genome Aggregation DatabaseAmericanSub838T=0.210C=0.790
The Genome Aggregation DatabaseEast AsianSub1616T=0.132C=0.868
The Genome Aggregation DatabaseEuropeSub18484T=0.173C=0.826
The Genome Aggregation DatabaseGlobalStudy-wide29970T=0.136C=0.863
The Genome Aggregation DatabaseOtherSub302T=0.300C=0.700
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.138C=0.861
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.187C=0.813
PMID Title Author Journal
22481050Genetic influences on craving for alcohol.Agrawal AAddict Behav

P-Value

SNP ID p-value Traits Study
rs19014392.67E-05alcohol craving with or without dependence22481050

eQTL of rs1901439 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1901439 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2134390931134391159E067-46312
chr2134399760134399940E067-37531
chr2134400006134400812E067-36659
chr2134400824134400932E067-36539
chr2134401333134401476E067-35995
chr2134401565134401783E067-35688
chr2134401824134401931E067-35540
chr2134410463134411311E067-26160
chr2134430943134431169E067-6302
chr2134433112134433349E067-4122
chr2134433387134433452E067-4019
chr2134433566134433686E067-3785
chr2134433704134434582E067-2889
chr2134437946134438164E067475
chr2134438497134438547E0671026
chr2134462980134463176E06725509
chr2134468273134468481E06730802
chr2134468519134468666E06731048
chr2134468914134469083E06731443
chr2134476227134476830E06738756
chr2134390122134390231E068-47240
chr2134390931134391159E068-46312
chr2134391198134391278E068-46193
chr2134393943134393987E068-43484
chr2134398952134399434E068-38037
chr2134399760134399940E068-37531
chr2134400006134400812E068-36659
chr2134400824134400932E068-36539
chr2134401333134401476E068-35995
chr2134401565134401783E068-35688
chr2134401824134401931E068-35540
chr2134402501134402735E068-34736
chr2134415269134415446E068-22025
chr2134415723134415901E068-21570
chr2134418107134418210E068-19261
chr2134418222134418330E068-19141
chr2134418408134418476E068-18995
chr2134419076134419127E068-18344
chr2134433112134433349E068-4122
chr2134433387134433452E068-4019
chr2134433566134433686E068-3785
chr2134433704134434582E068-2889
chr2134437946134438164E068475
chr2134438497134438547E0681026
chr2134468519134468666E06831048
chr2134468914134469083E06831443
chr2134476227134476830E06838756
chr2134390931134391159E069-46312
chr2134391198134391278E069-46193
chr2134398952134399434E069-38037
chr2134399760134399940E069-37531
chr2134400006134400812E069-36659
chr2134400824134400932E069-36539
chr2134401333134401476E069-35995
chr2134401565134401783E069-35688
chr2134401824134401931E069-35540
chr2134433566134433686E069-3785
chr2134433704134434582E069-2889
chr2134437946134438164E069475
chr2134438497134438547E0691026
chr2134448416134448731E06910945
chr2134449052134449092E06911581
chr2134449132134449196E06911661
chr2134468273134468481E06930802
chr2134468519134468666E06931048
chr2134468914134469083E06931443
chr2134476227134476830E06938756
chr2134400006134400812E070-36659
chr2134400824134400932E070-36539
chr2134401333134401476E070-35995
chr2134401565134401783E070-35688
chr2134401824134401931E070-35540
chr2134402501134402735E070-34736
chr2134402825134402879E070-34592
chr2134430943134431169E070-6302
chr2134431243134431452E070-6019
chr2134433112134433349E070-4122
chr2134433387134433452E070-4019
chr2134433566134433686E070-3785
chr2134433704134434582E070-2889
chr2134468100134468254E07030629
chr2134468273134468481E07030802
chr2134468519134468666E07031048
chr2134468914134469083E07031443
chr2134389675134389778E071-47693
chr2134390122134390231E071-47240
chr2134390931134391159E071-46312
chr2134391198134391278E071-46193
chr2134391438134392117E071-45354
chr2134392761134393043E071-44428
chr2134393943134393987E071-43484
chr2134399760134399940E071-37531
chr2134400006134400812E071-36659
chr2134400824134400932E071-36539
chr2134401333134401476E071-35995
chr2134401565134401783E071-35688
chr2134401824134401931E071-35540
chr2134402501134402735E071-34736
chr2134418107134418210E071-19261
chr2134418222134418330E071-19141
chr2134418408134418476E071-18995
chr2134419076134419127E071-18344
chr2134429371134429559E071-7912
chr2134433387134433452E071-4019
chr2134433566134433686E071-3785
chr2134433704134434582E071-2889
chr2134437946134438164E071475
chr2134447828134447882E07110357
chr2134448416134448731E07110945
chr2134449052134449092E07111581
chr2134449132134449196E07111661
chr2134462760134462820E07125289
chr2134462834134462909E07125363
chr2134462980134463176E07125509
chr2134468273134468481E07130802
chr2134468519134468666E07131048
chr2134468914134469083E07131443
chr2134476227134476830E07138756
chr2134484221134484306E07146750
chr2134390931134391159E072-46312
chr2134391198134391278E072-46193
chr2134398952134399434E072-38037
chr2134400006134400812E072-36659
chr2134400824134400932E072-36539
chr2134401333134401476E072-35995
chr2134401565134401783E072-35688
chr2134401824134401931E072-35540
chr2134419076134419127E072-18344
chr2134430943134431169E072-6302
chr2134433387134433452E072-4019
chr2134433566134433686E072-3785
chr2134433704134434582E072-2889
chr2134437946134438164E072475
chr2134438497134438547E0721026
chr2134448416134448731E07210945
chr2134462760134462820E07225289
chr2134462834134462909E07225363
chr2134462980134463176E07225509
chr2134468273134468481E07230802
chr2134468519134468666E07231048
chr2134468914134469083E07231443
chr2134476227134476830E07238756
chr2134399760134399940E073-37531
chr2134400006134400812E073-36659
chr2134400824134400932E073-36539
chr2134401333134401476E073-35995
chr2134401565134401783E073-35688
chr2134401824134401931E073-35540
chr2134418107134418210E073-19261
chr2134418222134418330E073-19141
chr2134418408134418476E073-18995
chr2134430943134431169E073-6302
chr2134433112134433349E073-4122
chr2134433387134433452E073-4019
chr2134433566134433686E073-3785
chr2134433704134434582E073-2889
chr2134484221134484306E07346750
chr2134389675134389778E074-47693
chr2134390122134390231E074-47240
chr2134390931134391159E074-46312
chr2134391198134391278E074-46193
chr2134392761134393043E074-44428
chr2134393943134393987E074-43484
chr2134399760134399940E074-37531
chr2134400006134400812E074-36659
chr2134400824134400932E074-36539
chr2134401333134401476E074-35995
chr2134401565134401783E074-35688
chr2134401824134401931E074-35540
chr2134430943134431169E074-6302
chr2134433387134433452E074-4019
chr2134433566134433686E074-3785
chr2134433704134434582E074-2889
chr2134437946134438164E074475
chr2134438497134438547E0741026
chr2134448416134448731E07410945
chr2134462980134463176E07425509
chr2134468273134468481E07430802
chr2134468519134468666E07431048
chr2134468914134469083E07431443
chr2134476227134476830E07438756
chr2134484221134484306E07446750
chr2134400006134400812E081-36659
chr2134400824134400932E081-36539
chr2134401333134401476E081-35995
chr2134401565134401783E081-35688
chr2134401824134401931E081-35540
chr2134402501134402735E081-34736
chr2134410463134411311E081-26160
chr2134430943134431169E081-6302
chr2134431243134431452E081-6019
chr2134431658134431874E081-5597
chr2134433112134433349E081-4122
chr2134433387134433452E081-4019
chr2134433566134433686E081-3785
chr2134400006134400812E082-36659
chr2134400824134400932E082-36539
chr2134401333134401476E082-35995
chr2134401565134401783E082-35688
chr2134401824134401931E082-35540
chr2134402501134402735E082-34736
chr2134402825134402879E082-34592
chr2134430943134431169E082-6302
chr2134431243134431452E082-6019
chr2134433387134433452E082-4019
chr2134433566134433686E082-3785










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr2134432017134433094E067-4377
chr2134432017134433094E068-4377
chr2134484571134484726E06847100
chr2134484823134484960E06847352
chr2134484999134485080E06847528
chr2134432017134433094E069-4377
chr2134484571134484726E06947100
chr2134484823134484960E06947352
chr2134484999134485080E06947528
chr2134432017134433094E070-4377
chr2134432017134433094E071-4377
chr2134484571134484726E07147100
chr2134484823134484960E07147352
chr2134484999134485080E07147528
chr2134432017134433094E072-4377
chr2134484571134484726E07247100
chr2134484823134484960E07247352
chr2134484999134485080E07247528
chr2134432017134433094E073-4377
chr2134484823134484960E07347352
chr2134484999134485080E07347528
chr2134432017134433094E074-4377
chr2134484823134484960E07447352
chr2134484999134485080E07447528
chr2134432017134433094E082-4377