rs1907926

Homo sapiens
T>A / T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0185 (5554/29900,GnomAD)
C=0226 (6595/29116,TOPMED)
C=0177 (886/5008,1000G)
C=0114 (439/3854,ALSPAC)
C=0112 (414/3708,TWINSUK)
chr10:56579481 (GRCh38.p7) (10q21.1)
ND
GWASdb2 | GWASCatalog
1   publication(s)
See rs on genome
42 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.56579481T>A
GRCh38.p7 chr 10NC_000010.11:g.56579481T>C
GRCh37.p13 chr 10NC_000010.10:g.58339241T>A
GRCh37.p13 chr 10NC_000010.10:g.58339241T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.622C=0.378
1000GenomesAmericanSub694T=0.780C=0.220
1000GenomesEast AsianSub1008T=0.996C=0.004
1000GenomesEuropeSub1006T=0.865C=0.135
1000GenomesGlobalStudy-wide5008T=0.823C=0.177
1000GenomesSouth AsianSub978T=0.900C=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.886C=0.114
The Genome Aggregation DatabaseAfricanSub8706T=0.664A=0.000
The Genome Aggregation DatabaseAmericanSub836T=0.760A=0.00,
The Genome Aggregation DatabaseEast AsianSub1610T=0.998A=0.000
The Genome Aggregation DatabaseEuropeSub18448T=0.870A=0.000
The Genome Aggregation DatabaseGlobalStudy-wide29900T=0.814A=0.000
The Genome Aggregation DatabaseOtherSub300T=0.890A=0.00,
Trans-Omics for Precision MedicineGlobalStudy-wide29116T=0.773C=0.226
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.888C=0.112
PMID Title Author Journal
23942779A genome-wide association study of behavioral disinhibition.McGue MBehav Genet

P-Value

SNP ID p-value Traits Study
rs19079262E-07nicotine use23942779

eQTL of rs1907926 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1907926 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr103343552633436416E068-42089
chr103351276933512866E06934264
chr103351292433512999E06934419
chr103343423633435424E070-43081
chr103343552633436416E070-42089
chr103345475633454848E070-23657
chr103345495433455138E070-23367
chr103345529233455356E070-23149
chr103347847233478573E0700
chr103347864733478727E070142
chr103352371333524734E07045208
chr103347864733478727E071142
chr103350100233501099E07122497
chr103350125533501555E07122750
chr103343552633436416E081-42089
chr103344320433443476E081-35029
chr103344350033443574E081-34931
chr103344358133443816E081-34689
chr103344383233443949E081-34556
chr103346878433468828E081-9677
chr103346911333469176E081-9329
chr103346932233469829E081-8676
chr103349866333499107E08120158
chr103349916333499228E08120658
chr103349933633499380E08120831
chr103349943333499515E08120928
chr103349973133500951E08121226
chr103350100233501099E08122497
chr103345475633454848E082-23657
chr103345495433455138E082-23367
chr103345529233455356E082-23149
chr103347847233478573E0820
chr103347864733478727E082142
chr103349866333499107E08220158
chr103349916333499228E08220658
chr103349933633499380E08220831
chr103349943333499515E08220928
chr103349973133500951E08221226
chr103350100233501099E08222497
chr103350125533501555E08222750
chr103351814433518279E08239639
chr103352371333524734E08245208