rs1909766

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
C=0264 (7701/29118,TOPMED)
C=0249 (7068/28376,GnomAD)
C=0230 (1150/5008,1000G)
C=0164 (631/3854,ALSPAC)
C=0144 (534/3708,TWINSUK)
chr16:61027486 (GRCh38.p7) (16q21)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 16NC_000016.10:g.61027486T>C
GRCh37.p13 chr 16NC_000016.9:g.61061390T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.558C=0.442
1000GenomesAmericanSub694T=0.800C=0.200
1000GenomesEast AsianSub1008T=0.866C=0.134
1000GenomesEuropeSub1006T=0.813C=0.187
1000GenomesGlobalStudy-wide5008T=0.770C=0.230
1000GenomesSouth AsianSub978T=0.890C=0.110
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.836C=0.164
The Genome Aggregation DatabaseAfricanSub8514T=0.582C=0.418
The Genome Aggregation DatabaseAmericanSub696T=0.800C=0.200
The Genome Aggregation DatabaseEast AsianSub1576T=0.869C=0.131
The Genome Aggregation DatabaseEuropeSub17290T=0.818C=0.181
The Genome Aggregation DatabaseGlobalStudy-wide28376T=0.750C=0.249
The Genome Aggregation DatabaseOtherSub300T=0.940C=0.060
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.735C=0.264
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.856C=0.144
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs19097660.000099alcohol dependence20201924
rs19097660.0000993alcoholismpha002892

eQTL of rs1909766 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1909766 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr166105810761058382E072-3008
chr166105810761058382E074-3008