rs1911546

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
C==0446 (13366/29928,GnomAD)
C==0341 (9946/29116,TOPMED)
C==0344 (1722/5008,1000G)
T=0446 (1717/3854,ALSPAC)
T=0450 (1668/3708,TWINSUK)
chr1:215475754 (GRCh38.p7) (1q41)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.215475754C>T
GRCh37.p13 chr 1NC_000001.10:g.215649097C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.026T=0.974
1000GenomesAmericanSub694C=0.570T=0.430
1000GenomesEast AsianSub1008C=0.548T=0.452
1000GenomesEuropeSub1006C=0.537T=0.463
1000GenomesGlobalStudy-wide5008C=0.344T=0.656
1000GenomesSouth AsianSub978C=0.210T=0.790
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.554T=0.446
The Genome Aggregation DatabaseAfricanSub8726C=0.099T=0.901
The Genome Aggregation DatabaseAmericanSub830C=0.550T=0.450
The Genome Aggregation DatabaseEast AsianSub1602C=0.577T=0.423
The Genome Aggregation DatabaseEuropeSub18468C=0.594T=0.405
The Genome Aggregation DatabaseGlobalStudy-wide29928C=0.446T=0.553
The Genome Aggregation DatabaseOtherSub302C=0.460T=0.540
Trans-Omics for Precision MedicineGlobalStudy-wide29116C=0.341T=0.658
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.550T=0.450
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs19115460.000366alcohol dependence21314694

eQTL of rs1911546 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1911546 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.