rs1932075

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
T=0358 (10723/29912,GnomAD)
T=0371 (10824/29118,TOPMED)
T=0413 (2067/5008,1000G)
T=0259 (997/3854,ALSPAC)
T=0257 (952/3708,TWINSUK)
chr9:95597834 (GRCh38.p7) (9q22.32)
AD
GWASdb2
1   publication(s)
See rs on genome
13 Enhancers around
1 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 9NC_000009.12:g.95597834C>T
GRCh37.p13 chr 9NC_000009.11:g.98360116C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.402T=0.598
1000GenomesAmericanSub694C=0.690T=0.310
1000GenomesEast AsianSub1008C=0.499T=0.501
1000GenomesEuropeSub1006C=0.758T=0.242
1000GenomesGlobalStudy-wide5008C=0.587T=0.413
1000GenomesSouth AsianSub978C=0.680T=0.320
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.741T=0.259
The Genome Aggregation DatabaseAfricanSub8686C=0.472T=0.528
The Genome Aggregation DatabaseAmericanSub838C=0.700T=0.300
The Genome Aggregation DatabaseEast AsianSub1616C=0.569T=0.431
The Genome Aggregation DatabaseEuropeSub18470C=0.723T=0.277
The Genome Aggregation DatabaseGlobalStudy-wide29912C=0.641T=0.358
The Genome Aggregation DatabaseOtherSub302C=0.770T=0.230
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.628T=0.371
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.743T=0.257
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs19320750.000863alcohol dependence21314694

eQTL of rs1932075 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1932075 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr99836809898368291E0707982
chr99836829298369255E0708176
chr99836938598369461E0709269
chr99836951898369611E0709402
chr99832998098330030E081-30086
chr99836809898368291E0817982
chr99836829298369255E0818176
chr99836938598369461E0819269
chr99836951898369611E0819402
chr99836809898368291E0827982
chr99836829298369255E0828176
chr99836938598369461E0829269
chr99836951898369611E0829402



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr99831507798315853E082-44263