rs1938512

Homo sapiens
C>A / C>G
LINC01037 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0220 (6598/29908,GnomAD)
A=0281 (1407/5008,1000G)
A=0142 (547/3854,ALSPAC)
A=0129 (477/3708,TWINSUK)
chr1:187453740 (GRCh38.p7) (1q31.1)
AD
GWASdb2
1   publication(s)
See rs on genome
30 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.187453740C>A
GRCh38.p7 chr 1NC_000001.11:g.187453740C>G
GRCh37.p13 chr 1NC_000001.10:g.187422872C>A
GRCh37.p13 chr 1NC_000001.10:g.187422872C>G

Gene: LINC01037, long intergenic non-protein coding RNA 1037(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LINC01037 transcriptNR_132374.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.585A=0.415
1000GenomesAmericanSub694C=0.780A=0.220
1000GenomesEast AsianSub1008C=0.700A=0.300
1000GenomesEuropeSub1006C=0.875A=0.125
1000GenomesGlobalStudy-wide5008C=0.719A=0.281
1000GenomesSouth AsianSub978C=0.720A=0.280
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.858A=0.142
The Genome Aggregation DatabaseAfricanSub8710C=0.647A=0.353
The Genome Aggregation DatabaseAmericanSub838C=0.760A=0.240
The Genome Aggregation DatabaseEast AsianSub1610C=0.698A=0.302
The Genome Aggregation DatabaseEuropeSub18448C=0.847A=0.152
The Genome Aggregation DatabaseGlobalStudy-wide29908C=0.779A=0.220
The Genome Aggregation DatabaseOtherSub302C=0.910A=0.090
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.871A=0.129
PMID Title Author Journal
24277619ALDH2 is associated to alcohol dependence and is the major genetic determinant of "daily maximum drinks" in a GWAS study of an isolated rural Chinese sample.Quillen EEAm J Med Genet B Neuropsychiatr Genet

P-Value

SNP ID p-value Traits Study
rs19385120.000345alcohol dependence24277619

eQTL of rs1938512 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1938512 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr13195555731955766E068-10992
chr13195588631956877E068-9881
chr13201384732015905E06847089
chr13192769431927858E070-38900
chr13192790931928016E070-38742
chr13192803031928131E070-38627
chr13195588631956877E070-9881
chr13195807931958428E070-8330
chr13199637131996475E07029613
chr13199656131996632E07029803
chr13199667131997437E07029913
chr13199746231997641E07030704
chr13201384732015905E07047089
chr13195555731955766E072-10992
chr13195588631956877E072-9881
chr13201384732015905E07347089
chr13195417331954358E081-12400
chr13195483931954985E081-11773
chr13195506831955142E081-11616
chr13195529531955360E081-11398
chr13195555731955766E081-10992
chr13195588631956877E081-9881
chr13195807931958428E081-8330
chr13195483931954985E082-11773
chr13195506831955142E082-11616
chr13195529531955360E082-11398
chr13195555731955766E082-10992
chr13195588631956877E082-9881
chr13195807931958428E082-8330
chr13198074031980943E08213982