rs1938831

Homo sapiens
T>C
None
Check p-value
SNV (Single Nucleotide Variation)
T==0269 (8040/29872,GnomAD)
T==0305 (8908/29118,TOPMED)
T==0205 (1029/5008,1000G)
T==0269 (1036/3854,ALSPAC)
T==0277 (1027/3708,TWINSUK)
chr11:101665605 (GRCh38.p7) (11q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
0 Enhancer around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.101665605T>C
GRCh37.p13 chr 11NC_000011.9:g.101536336T>C

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.328C=0.672
1000GenomesAmericanSub694T=0.210C=0.790
1000GenomesEast AsianSub1008T=0.001C=0.999
1000GenomesEuropeSub1006T=0.309C=0.691
1000GenomesGlobalStudy-wide5008T=0.205C=0.795
1000GenomesSouth AsianSub978T=0.140C=0.860
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.269C=0.731
The Genome Aggregation DatabaseAfricanSub8704T=0.326C=0.674
The Genome Aggregation DatabaseAmericanSub836T=0.160C=0.840
The Genome Aggregation DatabaseEast AsianSub1594T=0.001C=0.999
The Genome Aggregation DatabaseEuropeSub18438T=0.270C=0.729
The Genome Aggregation DatabaseGlobalStudy-wide29872T=0.269C=0.730
The Genome Aggregation DatabaseOtherSub300T=0.280C=0.720
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.305C=0.694
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.277C=0.723
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs19388314.63E-06alcohol dependence23089632

eQTL of rs1938831 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
Chr11:101536336TRPC6ENSG00000137672.8T>C2.4826e-4-206957Nucleus_accumbens_basal_ganglia

meQTL of rs1938831 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.