rs1944550

Homo sapiens
A>C / A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0197 (5915/29966,GnomAD)
G=0190 (5545/29118,TOPMED)
G=0192 (960/5008,1000G)
G=0182 (701/3854,ALSPAC)
G=0177 (658/3708,TWINSUK)
chr18:77303607 (GRCh38.p7) (18q23)
AD
GWASdb2
1   publication(s)
See rs on genome
12 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 18NC_000018.10:g.77303607A>C
GRCh38.p7 chr 18NC_000018.10:g.77303607A>G
GRCh37.p13 chr 18NC_000018.9:g.75015563A>C
GRCh37.p13 chr 18NC_000018.9:g.75015563A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.784G=0.216
1000GenomesAmericanSub694A=0.870G=0.130
1000GenomesEast AsianSub1008A=0.739G=0.261
1000GenomesEuropeSub1006A=0.802G=0.198
1000GenomesGlobalStudy-wide5008A=0.808G=0.192
1000GenomesSouth AsianSub978A=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.818G=0.182
The Genome Aggregation DatabaseAfricanSub8718A=0.799G=0.201
The Genome Aggregation DatabaseAmericanSub838A=0.890G=0.110
The Genome Aggregation DatabaseEast AsianSub1618A=0.704G=0.296
The Genome Aggregation DatabaseEuropeSub18490A=0.809G=0.190
The Genome Aggregation DatabaseGlobalStudy-wide29966A=0.802G=0.197
The Genome Aggregation DatabaseOtherSub302A=0.750G=0.250
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.809G=0.190
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.823G=0.177
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs19445507.6E-05alcoholism (heaviness of drinking)21529783

eQTL of rs1944550 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1944550 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr184350015443501079E06726240
chr184343125243431456E068-42458
chr184343150043431628E068-42286
chr184343164143431803E068-42111
chr184350015443501079E06826240
chr184350015443501079E07126240
chr184343125243431456E072-42458
chr184343150043431628E072-42286
chr184343164143431803E072-42111
chr184350015443501079E07426240
chr184342693343427024E081-46890
chr184345622443456337E082-17577