rs195207

Homo sapiens
C>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0162 (4868/29890,GnomAD)
A=0153 (4464/29118,TOPMED)
A=0268 (1342/5008,1000G)
A=0177 (682/3854,ALSPAC)
A=0176 (653/3708,TWINSUK)
chr1:115185327 (GRCh38.p7) (1p13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
34 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 1NC_000001.11:g.115185327C>A
GRCh37.p13 chr 1NC_000001.10:g.115727948C>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322C=0.919A=0.081
1000GenomesAmericanSub694C=0.680A=0.320
1000GenomesEast AsianSub1008C=0.612A=0.388
1000GenomesEuropeSub1006C=0.811A=0.189
1000GenomesGlobalStudy-wide5008C=0.732A=0.268
1000GenomesSouth AsianSub978C=0.560A=0.440
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854C=0.823A=0.177
The Genome Aggregation DatabaseAfricanSub8708C=0.903A=0.097
The Genome Aggregation DatabaseAmericanSub838C=0.670A=0.330
The Genome Aggregation DatabaseEast AsianSub1608C=0.629A=0.371
The Genome Aggregation DatabaseEuropeSub18434C=0.832A=0.167
The Genome Aggregation DatabaseGlobalStudy-wide29890C=0.837A=0.162
The Genome Aggregation DatabaseOtherSub302C=0.760A=0.240
Trans-Omics for Precision MedicineGlobalStudy-wide29118C=0.846A=0.153
UK 10K study - TwinsTWIN COHORTStudy-wide3708C=0.824A=0.176
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs1952078.5E-05alcoholism (heaviness of drinking)21529783

eQTL of rs195207 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs195207 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr1115729380115729475E0671432
chr1115729570115729719E0671622
chr1115727449115727873E068-75
chr1115729380115729475E0681432
chr1115729570115729719E0681622
chr1115681449115682015E069-45933
chr1115682051115682138E069-45810
chr1115729380115729475E0691432
chr1115729570115729719E0691622
chr1115772428115772490E06944480
chr1115772556115772616E06944608
chr1115772967115773162E06945019
chr1115773206115773422E06945258
chr1115758780115758830E07030832
chr1115758873115758931E07030925
chr1115758992115759051E07031044
chr1115681449115682015E071-45933
chr1115729380115729475E0711432
chr1115729570115729719E0711622
chr1115729380115729475E0721432
chr1115729570115729719E0721622
chr1115773206115773422E07245258
chr1115681449115682015E073-45933
chr1115682051115682138E073-45810
chr1115772967115773162E07445019
chr1115773206115773422E07445258
chr1115726295115727392E081-556
chr1115727449115727873E081-75
chr1115734909115735043E0816961
chr1115735122115735198E0817174
chr1115736693115736824E0818745
chr1115766874115767277E08138926
chr1115725883115725998E082-1950
chr1115726295115727392E082-556