rs1958420

Homo sapiens
T>G
None
Check p-value
SNV (Single Nucleotide Variation)
T==0221 (6620/29902,GnomAD)
T==0215 (6264/29118,TOPMED)
T==0155 (776/5008,1000G)
T==0298 (1150/3854,ALSPAC)
T==0324 (1201/3708,TWINSUK)
chr14:83714020 (GRCh38.p7) (14q31.2)
AD
GWASdb2
1   publication(s)
See rs on genome
10 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 14NC_000014.9:g.83714020T>G
GRCh37.p13 chr 14NC_000014.8:g.84180364T>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322T=0.118G=0.882
1000GenomesAmericanSub694T=0.200G=0.800
1000GenomesEast AsianSub1008T=0.033G=0.967
1000GenomesEuropeSub1006T=0.300G=0.700
1000GenomesGlobalStudy-wide5008T=0.155G=0.845
1000GenomesSouth AsianSub978T=0.150G=0.850
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854T=0.298G=0.702
The Genome Aggregation DatabaseAfricanSub8720T=0.145G=0.855
The Genome Aggregation DatabaseAmericanSub836T=0.160G=0.840
The Genome Aggregation DatabaseEast AsianSub1596T=0.035G=0.965
The Genome Aggregation DatabaseEuropeSub18448T=0.276G=0.723
The Genome Aggregation DatabaseGlobalStudy-wide29902T=0.221G=0.778
The Genome Aggregation DatabaseOtherSub302T=0.200G=0.800
Trans-Omics for Precision MedicineGlobalStudy-wide29118T=0.215G=0.784
UK 10K study - TwinsTWIN COHORTStudy-wide3708T=0.324G=0.676
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs19584200.000819alcohol dependence20201924

eQTL of rs1958420 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1958420 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr148417259184173554E081-6810
chr148417639784176487E081-3877
chr148417716984177239E081-3125
chr148417739384178470E081-1894
chr148418076884180904E081404
chr148421263984213018E08132275
chr148421321084213277E08132846
chr148421338684213449E08133022
chr148421356184213747E08133197
chr148417739384178470E082-1894