rs196313

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
A=0165 (4959/29934,GnomAD)
A=0188 (5486/29118,TOPMED)
A=0151 (756/5008,1000G)
A=0163 (630/3854,ALSPAC)
A=0154 (571/3708,TWINSUK)
chr10:119623524 (GRCh38.p7) (10q26.11)
AD
GWASdb2
1   publication(s)
See rs on genome
168 Enhancers around
19 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 10NC_000010.11:g.119623524G>A
GRCh37.p13 chr 10NC_000010.10:g.121383036G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.750A=0.250
1000GenomesAmericanSub694G=0.860A=0.140
1000GenomesEast AsianSub1008G=0.921A=0.079
1000GenomesEuropeSub1006G=0.847A=0.153
1000GenomesGlobalStudy-wide5008G=0.849A=0.151
1000GenomesSouth AsianSub978G=0.900A=0.100
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.837A=0.163
The Genome Aggregation DatabaseAfricanSub8692G=0.752A=0.248
The Genome Aggregation DatabaseAmericanSub836G=0.880A=0.120
The Genome Aggregation DatabaseEast AsianSub1620G=0.925A=0.075
The Genome Aggregation DatabaseEuropeSub18484G=0.861A=0.138
The Genome Aggregation DatabaseGlobalStudy-wide29934G=0.834A=0.165
The Genome Aggregation DatabaseOtherSub302G=0.920A=0.080
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.811A=0.188
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.846A=0.154
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs1963130.00042alcohol dependence20201924

eQTL of rs196313 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs196313 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr10121346898121346956E067-36080
chr10121347142121347182E067-35854
chr10121351265121351315E067-31721
chr10121351633121351689E067-31347
chr10121351881121351979E067-31057
chr10121352072121352206E067-30830
chr10121352301121352548E067-30488
chr10121352654121352831E067-30205
chr10121352864121353133E067-29903
chr10121353426121353477E067-29559
chr10121353657121353722E067-29314
chr10121353734121353821E067-29215
chr10121353973121354021E067-29015
chr10121354049121354205E067-28831
chr10121367798121368230E067-14806
chr10121351633121351689E068-31347
chr10121351881121351979E068-31057
chr10121352072121352206E068-30830
chr10121352301121352548E068-30488
chr10121352654121352831E068-30205
chr10121352864121353133E068-29903
chr10121353426121353477E068-29559
chr10121353657121353722E068-29314
chr10121353734121353821E068-29215
chr10121353973121354021E068-29015
chr10121354049121354205E068-28831
chr10121377723121377837E068-5199
chr10121377906121378701E068-4335
chr10121378827121378988E068-4048
chr10121418477121418696E06835441
chr10121418772121418888E06835736
chr10121418952121419058E06835916
chr10121420902121420979E06837866
chr10121426770121426855E06843734
chr10121426877121428647E06843841
chr10121351633121351689E069-31347
chr10121351881121351979E069-31057
chr10121352072121352206E069-30830
chr10121352301121352548E069-30488
chr10121352654121352831E069-30205
chr10121352864121353133E069-29903
chr10121353426121353477E069-29559
chr10121353657121353722E069-29314
chr10121353734121353821E069-29215
chr10121353973121354021E069-29015
chr10121354049121354205E069-28831
chr10121416031121416834E06932995
chr10121416910121417612E06933874
chr10121417661121418425E06934625
chr10121418477121418696E06935441
chr10121426770121426855E06943734
chr10121426877121428647E06943841
chr10121352072121352206E070-30830
chr10121352301121352548E070-30488
chr10121353426121353477E070-29559
chr10121353734121353821E070-29215
chr10121353973121354021E070-29015
chr10121351633121351689E071-31347
chr10121351881121351979E071-31057
chr10121352072121352206E071-30830
chr10121352301121352548E071-30488
chr10121352654121352831E071-30205
chr10121352864121353133E071-29903
chr10121353426121353477E071-29559
chr10121353657121353722E071-29314
chr10121353734121353821E071-29215
chr10121353973121354021E071-29015
chr10121354049121354205E071-28831
chr10121377469121377569E071-5467
chr10121377723121377837E071-5199
chr10121377906121378701E071-4335
chr10121416910121417612E07133874
chr10121417661121418425E07134625
chr10121418477121418696E07135441
chr10121418772121418888E07135736
chr10121422886121423034E07139850
chr10121423228121424476E07140192
chr10121426293121426367E07143257
chr10121426770121426855E07143734
chr10121426877121428647E07143841
chr10121428670121428793E07145634
chr10121351633121351689E072-31347
chr10121351881121351979E072-31057
chr10121352072121352206E072-30830
chr10121352301121352548E072-30488
chr10121352654121352831E072-30205
chr10121352864121353133E072-29903
chr10121353426121353477E072-29559
chr10121353657121353722E072-29314
chr10121353734121353821E072-29215
chr10121353973121354021E072-29015
chr10121354049121354205E072-28831
chr10121368613121368715E072-14321
chr10121368723121368823E072-14213
chr10121416910121417612E07233874
chr10121417661121418425E07234625
chr10121418477121418696E07235441
chr10121418772121418888E07235736
chr10121418952121419058E07235916
chr10121419244121419997E07236208
chr10121426877121428647E07243841
chr10121351881121351979E073-31057
chr10121352072121352206E073-30830
chr10121352301121352548E073-30488
chr10121352654121352831E073-30205
chr10121352864121353133E073-29903
chr10121353426121353477E073-29559
chr10121353657121353722E073-29314
chr10121353734121353821E073-29215
chr10121353973121354021E073-29015
chr10121354049121354205E073-28831
chr10121368436121368610E073-14426
chr10121416910121417612E07333874
chr10121417661121418425E07334625
chr10121418477121418696E07335441
chr10121418772121418888E07335736
chr10121418952121419058E07335916
chr10121419244121419997E07336208
chr10121425367121426273E07342331
chr10121426770121426855E07343734
chr10121426877121428647E07343841
chr10121428670121428793E07345634
chr10121351633121351689E074-31347
chr10121351881121351979E074-31057
chr10121352072121352206E074-30830
chr10121352301121352548E074-30488
chr10121352654121352831E074-30205
chr10121352864121353133E074-29903
chr10121353657121353722E074-29314
chr10121353973121354021E074-29015
chr10121354049121354205E074-28831
chr10121368436121368610E074-14426
chr10121368613121368715E074-14321
chr10121368723121368823E074-14213
chr10121377723121377837E074-5199
chr10121377906121378701E074-4335
chr10121378827121378988E074-4048
chr10121379013121379189E074-3847
chr10121416910121417612E07433874
chr10121417661121418425E07434625
chr10121418477121418696E07435441
chr10121418772121418888E07435736
chr10121418952121419058E07435916
chr10121419244121419997E07436208
chr10121420902121420979E07437866
chr10121421244121421317E07438208
chr10121425367121426273E07442331
chr10121426770121426855E07443734
chr10121426877121428647E07443841
chr10121352654121352831E081-30205
chr10121352864121353133E081-29903
chr10121353426121353477E081-29559
chr10121353657121353722E081-29314
chr10121353734121353821E081-29215
chr10121353973121354021E081-29015
chr10121354049121354205E081-28831
chr10121377723121377837E081-5199
chr10121377906121378701E081-4335
chr10121378827121378988E081-4048
chr10121379013121379189E081-3847
chr10121379254121379352E081-3684
chr10121351881121351979E082-31057
chr10121352072121352206E082-30830
chr10121354049121354205E082-28831
chr10121377906121378701E082-4335
chr10121378827121378988E082-4048
chr10121379013121379189E082-3847
chr10121413966121414801E08230930










Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr10121354947121357768E067-25268
chr10121409777121413161E06726741
chr10121354947121357768E068-25268
chr10121409777121413161E06826741
chr10121354947121357768E069-25268
chr10121409777121413161E06926741
chr10121354947121357768E070-25268
chr10121409777121413161E07026741
chr10121354947121357768E071-25268
chr10121409777121413161E07126741
chr10121354947121357768E072-25268
chr10121409777121413161E07226741
chr10121354947121357768E073-25268
chr10121409777121413161E07326741
chr10121354947121357768E074-25268
chr10121409777121413161E07426741
chr10121354947121357768E081-25268
chr10121354947121357768E082-25268
chr10121409777121413161E08226741