rs1972537

Homo sapiens
G>A
None
Check p-value
SNV (Single Nucleotide Variation)
G==0204 (6110/29940,GnomAD)
G==0230 (6710/29118,TOPMED)
G==0164 (819/5008,1000G)
G==0133 (512/3854,ALSPAC)
G==0120 (446/3708,TWINSUK)
chr19:39765688 (GRCh38.p7) (19q13.2)
AD
GWASdb2
1   publication(s)
See rs on genome
2 Enhancers around
7 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 19NC_000019.10:g.39765688G>A
GRCh38.p7 chr 19 fix patch HG2021_PATCHNW_009646206.1:g.25564G>A
GRCh37.p13 chr 19NC_000019.9:g.40256328G>A

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.417A=0.583
1000GenomesAmericanSub694G=0.130A=0.870
1000GenomesEast AsianSub1008G=0.000A=1.000
1000GenomesEuropeSub1006G=0.163A=0.837
1000GenomesGlobalStudy-wide5008G=0.164A=0.836
1000GenomesSouth AsianSub978G=0.010A=0.990
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.133A=0.867
The Genome Aggregation DatabaseAfricanSub8688G=0.384A=0.616
The Genome Aggregation DatabaseAmericanSub836G=0.110A=0.890
The Genome Aggregation DatabaseEast AsianSub1620G=0.000A=1.000
The Genome Aggregation DatabaseEuropeSub18494G=0.143A=0.856
The Genome Aggregation DatabaseGlobalStudy-wide29940G=0.204A=0.795
The Genome Aggregation DatabaseOtherSub302G=0.120A=0.880
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.230A=0.769
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.120A=0.880
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs19725370.000955alcohol dependence21314694

eQTL of rs1972537 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1972537 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr194028331640283433E06826988
chr194029582940296162E07039501


Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr194028354340284273E06727215
chr194028354340284273E06827215
chr194028354340284273E06927215
chr194028354340284273E07027215
chr194028354340284273E07127215
chr194028354340284273E07427215
chr194028354340284273E08227215