rs197710

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0431 (12897/29896,GnomAD)
A==0425 (12397/29118,TOPMED)
A==0390 (1954/5008,1000G)
G=0495 (1909/3854,ALSPAC)
A==0500 (1853/3708,TWINSUK)
chr11:32816742 (GRCh38.p7) (11p13)
AD
GWASdb2
1   publication(s)
See rs on genome
4 Enhancers around
17 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 11NC_000011.10:g.32816742A>G
GRCh37.p13 chr 11NC_000011.9:g.32838288A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.303G=0.697
1000GenomesAmericanSub694A=0.330G=0.670
1000GenomesEast AsianSub1008A=0.532G=0.468
1000GenomesEuropeSub1006A=0.476G=0.524
1000GenomesGlobalStudy-wide5008A=0.390G=0.610
1000GenomesSouth AsianSub978A=0.320G=0.680
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.505G=0.495
The Genome Aggregation DatabaseAfricanSub8704A=0.363G=0.637
The Genome Aggregation DatabaseAmericanSub836A=0.330G=0.670
The Genome Aggregation DatabaseEast AsianSub1606A=0.579G=0.421
The Genome Aggregation DatabaseEuropeSub18448A=0.453G=0.546
The Genome Aggregation DatabaseGlobalStudy-wide29896A=0.431G=0.568
The Genome Aggregation DatabaseOtherSub302A=0.560G=0.440
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.425G=0.574
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.500G=0.500
PMID Title Author Journal
21314694Genomewide association analysis of symptoms of alcohol dependence in the molecular genetics of schizophrenia (MGS2) control sample.Kendler KSAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs1977100.000407alcohol dependence21314694

eQTL of rs197710 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs197710 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr113287291332873063E06834625
chr113287291332873063E07134625
chr113281409932814149E074-24139
chr113287291332873063E07434625



Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr113281423632814860E067-23428
chr113285077032852678E06712482
chr113281423632814860E068-23428
chr113285077032852678E06812482
chr113281423632814860E069-23428
chr113281496632815051E069-23237
chr113285077032852678E06912482
chr113281423632814860E071-23428
chr113281496632815051E071-23237
chr113285077032852678E07112482
chr113281423632814860E072-23428
chr113285077032852678E07212482
chr113281423632814860E073-23428
chr113281496632815051E073-23237
chr113285077032852678E07312482
chr113285077032852678E07412482
chr113281423632814860E082-23428