rs1995364

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0376 (11253/29900,GnomAD)
A==0371 (10824/29118,TOPMED)
A==0333 (1669/5008,1000G)
A==0420 (1618/3854,ALSPAC)
A==0417 (1548/3708,TWINSUK)
chr5:10903669 (GRCh38.p7) (5p15.2)
AD
GWASdb2
1   publication(s)
See rs on genome
29 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.10903669A>G
GRCh37.p13 chr 5NC_000005.9:g.10903781A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.266G=0.734
1000GenomesAmericanSub694A=0.440G=0.560
1000GenomesEast AsianSub1008A=0.309G=0.691
1000GenomesEuropeSub1006A=0.406G=0.594
1000GenomesGlobalStudy-wide5008A=0.333G=0.667
1000GenomesSouth AsianSub978A=0.300G=0.700
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.420G=0.580
The Genome Aggregation DatabaseAfricanSub8686A=0.310G=0.690
The Genome Aggregation DatabaseAmericanSub838A=0.470G=0.530
The Genome Aggregation DatabaseEast AsianSub1614A=0.263G=0.737
The Genome Aggregation DatabaseEuropeSub18460A=0.412G=0.587
The Genome Aggregation DatabaseGlobalStudy-wide29900A=0.376G=0.623
The Genome Aggregation DatabaseOtherSub302A=0.430G=0.570
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.371G=0.628
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.417G=0.583
PMID Title Author Journal
23089632A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53.Wang JCMol Psychiatry

P-Value

SNP ID p-value Traits Study
rs19953648.79E-07alcohol dependence23089632

eQTL of rs1995364 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs1995364 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr51085655910856641E067-47140
chr51085793610858018E067-45763
chr51085655910856641E068-47140
chr51085655910856641E069-47140
chr51085793610858018E069-45763
chr51091269210912864E0698911
chr51085675010857883E070-45898
chr51091269210912864E0708911
chr51085471210854914E071-48867
chr51085502310855269E071-48512
chr51085655910856641E072-47140
chr51085655910856641E073-47140
chr51085793610858018E073-45763
chr51085655910856641E074-47140
chr51085675010857883E074-45898
chr51085655910856641E081-47140
chr51085675010857883E081-45898
chr51085793610858018E081-45763
chr51085846610858516E081-45265
chr51085858410858654E081-45127
chr51087047510870629E081-33152
chr51087081510871339E081-32442
chr51091478410914834E08111003
chr51091499410915158E08111213
chr51093426210934333E08130481
chr51093498110935024E08131200
chr51085675010857883E082-45898
chr51085793610858018E082-45763
chr51087047510870629E082-33152