rs199732820

Homo sapiens
C>T
None
Check p-value
SNV (Single Nucleotide Variation)
None (
chrX:123529690 (GRCh38.p7) (Xq25)
ND
GWASdb2
1   publication(s)
See rs on genome
14 Enhancers around
5 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr XNC_000023.11:g.123529690C>T
GRCh37.p13 chr XNC_000023.10:g.122663541C>T

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
PMID Title Author Journal
20158304A genomewide association study of nicotine and alcohol dependence in Australian and Dutch populations.Lind PATwin Res Hum Genet

P-Value

SNP ID p-value Traits Study
rs1997328203.02E-05alcohol and nictotine co-dependence20158304

eQTL of rs199732820 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs199732820 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chrX122614220122614272E067-49269
chrX122614394122614494E069-49047
chrX122614540122614646E069-48895
chrX122614220122614272E070-49269
chrX122614394122614494E070-49047
chrX122614540122614646E070-48895
chrX122614220122614272E071-49269
chrX122614394122614494E071-49047
chrX122614540122614646E071-48895
chrX122615862122616107E071-47434
chrX122616241122616604E071-46937
chrX122613580122613630E081-49911
chrX122613894122614154E081-49387
chrX122615355122615488E082-48053






Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chrX122616141122616203E067-47338
chrX122616141122616203E068-47338
chrX122616141122616203E069-47338
chrX122616141122616203E070-47338
chrX122616141122616203E072-47338