Sequence Name | Change(s) |
---|---|
GRCh38.p7 chr 10 | NC_000010.11:g.119457411G>A |
GRCh37.p13 chr 10 | NC_000010.10:g.121216923G>A |
Study | Population | Group | Sample # | Ref Allele | Alt Allele |
---|---|---|---|---|---|
1000Genomes | African | Sub | 1322 | G=0.995 | A=0.005 |
1000Genomes | American | Sub | 694 | G=0.890 | A=0.110 |
1000Genomes | East Asian | Sub | 1008 | G=0.700 | A=0.300 |
1000Genomes | Europe | Sub | 1006 | G=0.911 | A=0.089 |
1000Genomes | Global | Study-wide | 5008 | G=0.868 | A=0.132 |
1000Genomes | South Asian | Sub | 978 | G=0.810 | A=0.190 |
The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | G=0.886 | A=0.114 |
The Genome Aggregation Database | African | Sub | 8714 | G=0.971 | A=0.029 |
The Genome Aggregation Database | American | Sub | 838 | G=0.900 | A=0.100 |
The Genome Aggregation Database | East Asian | Sub | 1612 | G=0.717 | A=0.283 |
The Genome Aggregation Database | Europe | Sub | 18464 | G=0.899 | A=0.101 |
The Genome Aggregation Database | Global | Study-wide | 29930 | G=0.910 | A=0.089 |
The Genome Aggregation Database | Other | Sub | 302 | G=0.910 | A=0.090 |
Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | G=0.930 | A=0.069 |
UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | G=0.879 | A=0.121 |
PMID | Title | Author | Journal |
---|---|---|---|
20201924 | Genome-wide association study of alcohol dependence implicates a region on chromosome 11. | Edenberg HJ | Alcohol Clin Exp Res |
SNP ID | p-value | Traits | Study |
---|---|---|---|
rs1999627 | 0.00019 | alcohol dependence | 20201924 |
Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
---|---|---|---|---|---|---|---|
There is no eQTL annotation for this SNP |
Probe ID | Position | Gene | beta | p-value | |||
---|---|---|---|---|---|---|---|
There is no meQTL annotation for this SNP |
There is no significant Hi-C chromatin interaction data for this SNP.
Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
---|---|---|---|---|
chr10 | 121253817 | 121254967 | E067 | 36894 |
chr10 | 121254976 | 121255070 | E067 | 38053 |
chr10 | 121254976 | 121255070 | E068 | 38053 |
chr10 | 121253817 | 121254967 | E069 | 36894 |
chr10 | 121181127 | 121182266 | E070 | -34657 |
chr10 | 121182308 | 121182358 | E070 | -34565 |
chr10 | 121182435 | 121182619 | E070 | -34304 |
chr10 | 121253495 | 121253632 | E070 | 36572 |
chr10 | 121253817 | 121254967 | E070 | 36894 |
chr10 | 121254976 | 121255070 | E070 | 38053 |
chr10 | 121255100 | 121255301 | E070 | 38177 |
chr10 | 121181127 | 121182266 | E071 | -34657 |
chr10 | 121253817 | 121254967 | E071 | 36894 |
chr10 | 121184179 | 121184232 | E072 | -32691 |
chr10 | 121184286 | 121184497 | E072 | -32426 |
chr10 | 121184502 | 121184576 | E072 | -32347 |
chr10 | 121184598 | 121184658 | E072 | -32265 |
chr10 | 121253495 | 121253632 | E072 | 36572 |
chr10 | 121253817 | 121254967 | E072 | 36894 |
chr10 | 121171630 | 121174291 | E073 | -42632 |
chr10 | 121248829 | 121249663 | E074 | 31906 |
chr10 | 121171630 | 121174291 | E081 | -42632 |
chr10 | 121249761 | 121250077 | E081 | 32838 |
chr10 | 121251459 | 121252290 | E081 | 34536 |
chr10 | 121263230 | 121263284 | E082 | 46307 |