rs200457189

Homo sapiens
delT(A)4
ARL15 : Intron Variant
Check p-value
Indel (Insertion and Deletion)
delT(A) (
4=0000 (1/29118,TOPMED)
chr5:54269225-54269251 (GRCh38.p7) (5q11.2)
AD
GWASdb2
1   publication(s)
See rs on genome
27 Enhancers around
11 Promoters around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.54269227_54269231[4]
GRCh37.p13 chr 5NC_000005.9:g.53565057_53565061[4]

Gene: ARL15, ADP ribosylation factor like GTPase 15(minus strand)

Molecule type Change Amino acid[Codon] SO Term
ARL15 transcriptNM_019087.2:c.N/AIntron Variant
ARL15 transcript variant X1XM_011543498.2:c.N/AIntron Variant
ARL15 transcript variant X2XM_011543499.2:c.N/AIntron Variant
ARL15 transcript variant X3XM_011543500.2:c.N/AIntron Variant
ARL15 transcript variant X4XM_017009598.1:c.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
Trans-Omics for Precision MedicineGlobalStudy-wide29118(AATAA)5AA=1.000delT(A)4=0.000
PMID Title Author Journal
24962325Genome-wide survival analysis of age at onset of alcohol dependence in extended high-risk COGA families.Kapoor MDrug Alcohol Depend

P-Value

SNP ID p-value Traits Study
rs2004571895.06E-07alcohol dependence (age at onset)24962325

eQTL of rs200457189 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs200457189 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr55359219153592302E06727134
chr55359230553592489E06727248
chr55360474653604828E06739689
chr55352492153525456E068-39601
chr55359156353591979E06826506
chr55359219153592302E06827134
chr55359230553592489E06827248
chr55357394153574185E0698884
chr55357422253574433E0699165
chr55360335753603465E07038300
chr55360351753603786E07038460
chr55360440353604546E07039346
chr55360474653604828E07139689
chr55357394153574185E0728884
chr55357422253574433E0729165
chr55357444553574505E0729388
chr55357422253574433E0749165
chr55357444553574505E0749388
chr55359119253591246E07426135
chr55359156353591979E07426506
chr55359219153592302E07427134
chr55359230553592489E07427248
chr55360351753603786E08138460
chr55360427953604329E08139222
chr55360440353604546E08139346
chr55360474653604828E08139689
chr55360803253608085E08142975








Promoter Annotation (GRCh37.p13)

Chromosome Start End Region Distance(-/+:Up/Downstream)
chr55360503053607991E06739973
chr55360503053607991E06839973
chr55360503053607991E06939973
chr55360503053607991E07039973
chr55355060653550896E071-14161
chr55360503053607991E07139973
chr55360503053607991E07239973
chr55360503053607991E07339973
chr55360503053607991E07439973
chr55360503053607991E08139973
chr55360503053607991E08239973