rs2009403

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
G=0102 (2976/29118,TOPMED)
G=0123 (616/5008,1000G)
G=0028 (107/3854,ALSPAC)
G=0027 (100/3708,TWINSUK)
chr15:70185565 (GRCh38.p7) (15q23)
AD
GWASdb2
1   publication(s)
See rs on genome
143 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 15NC_000015.10:g.70185565A>G
GRCh37.p13 chr 15NC_000015.9:g.70477904A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.768G=0.232
1000GenomesAmericanSub694A=0.920G=0.080
1000GenomesEast AsianSub1008A=0.902G=0.098
1000GenomesEuropeSub1006A=0.976G=0.024
1000GenomesGlobalStudy-wide5008A=0.877G=0.123
1000GenomesSouth AsianSub978A=0.870G=0.130
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.972G=0.028
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.897G=0.102
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.973G=0.027
PMID Title Author Journal
20201924Genome-wide association study of alcohol dependence implicates a region on chromosome 11.Edenberg HJAlcohol Clin Exp Res

P-Value

SNP ID p-value Traits Study
rs20094030.000607alcohol dependence20201924

eQTL of rs2009403 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2009403 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr157048742670489875E0679522
chr157044859070448739E068-29165
chr157045317170453511E068-24393
chr157045354470453747E068-24157
chr157045379970453884E068-24020
chr157045720870458983E068-18921
chr157044859070448739E069-29165
chr157044890670449697E069-28207
chr157043023970430300E070-47604
chr157044071970440779E070-37125
chr157044083370441222E070-36682
chr157044129870441374E070-36530
chr157044614270446364E070-31540
chr157044640970447739E070-30165
chr157044782870447875E070-30029
chr157044793570447979E070-29925
chr157044802270448107E070-29797
chr157044841370448538E070-29366
chr157044859070448739E070-29165
chr157044890670449697E070-28207
chr157045720870458983E070-18921
chr157047321270474223E070-3681
chr157048220170482415E0704297
chr157048248870482810E0704584
chr157048288970482996E0704985
chr157048329370483702E0705389
chr157048742670489875E0709522
chr157048991370491066E07012009
chr157049115970491213E07013255
chr157049122270491568E07013318
chr157049157770491679E07013673
chr157049176270492539E07013858
chr157049257170493823E07014667
chr157049383370493988E07015929
chr157049411570494198E07016211
chr157049452570494579E07016621
chr157049474270494816E07016838
chr157049497170495139E07017067
chr157049516070495210E07017256
chr157049523070495352E07017326
chr157049578170495884E07017877
chr157050501670505091E07027112
chr157050518070505562E07027276
chr157050579170505841E07027887
chr157050887170508921E07030967
chr157050940470509594E07031500
chr157051114670511266E07033242
chr157051131570511444E07033411
chr157051159470511913E07033690
chr157051204270512126E07034138
chr157051230670512385E07034402
chr157051240470512464E07034500
chr157051311070513418E07035206
chr157051773670518033E07039832
chr157051871070518890E07040806
chr157051892770518977E07041023
chr157051905970519124E07041155
chr157051913270519182E07041228
chr157045354470453747E071-24157
chr157045379970453884E071-24020
chr157045394170454074E071-23830
chr157048742670489875E0719522
chr157048742670489875E0729522
chr157045317170453511E073-24393
chr157045354470453747E073-24157
chr157048742670489875E0739522
chr157048742670489875E0749522
chr157044017770440466E081-37438
chr157044071970440779E081-37125
chr157044083370441222E081-36682
chr157044129870441374E081-36530
chr157044614270446364E081-31540
chr157044640970447739E081-30165
chr157044782870447875E081-30029
chr157044793570447979E081-29925
chr157044802270448107E081-29797
chr157044841370448538E081-29366
chr157044859070448739E081-29165
chr157044890670449697E081-28207
chr157044978070449945E081-27959
chr157045010170450174E081-27730
chr157045024470450342E081-27562
chr157045039470450478E081-27426
chr157045061570450676E081-27228
chr157045073270450808E081-27096
chr157045081170450920E081-26984
chr157045317170453511E081-24393
chr157045354470453747E081-24157
chr157045379970453884E081-24020
chr157045720870458983E081-18921
chr157047278670472860E081-5044
chr157047289170473002E081-4902
chr157047300670473111E081-4793
chr157047321270474223E081-3681
chr157048742670489875E0819522
chr157048991370491066E08112009
chr157049115970491213E08113255
chr157049122270491568E08113318
chr157049157770491679E08113673
chr157049176270492539E08113858
chr157049257170493823E08114667
chr157049383370493988E08115929
chr157049411570494198E08116211
chr157049452570494579E08116621
chr157049474270494816E08116838
chr157049497170495139E08117067
chr157049516070495210E08117256
chr157049523070495352E08117326
chr157049821870498274E08120314
chr157049873170498803E08120827
chr157049885970498933E08120955
chr157049915270499313E08121248
chr157050501670505091E08127112
chr157050518070505562E08127276
chr157044640970447739E082-30165
chr157044782870447875E082-30029
chr157044793570447979E082-29925
chr157044802270448107E082-29797
chr157044841370448538E082-29366
chr157044859070448739E082-29165
chr157044890670449697E082-28207
chr157044978070449945E082-27959
chr157045010170450174E082-27730
chr157045024470450342E082-27562
chr157045039470450478E082-27426
chr157045061570450676E082-27228
chr157045073270450808E082-27096
chr157045720870458983E082-18921
chr157047321270474223E082-3681
chr157048288970482996E0824985
chr157048329370483702E0825389
chr157049115970491213E08213255
chr157049122270491568E08213318
chr157049157770491679E08213673
chr157049176270492539E08213858
chr157049411570494198E08216211
chr157049452570494579E08216621
chr157049474270494816E08216838
chr157049497170495139E08217067
chr157049516070495210E08217256
chr157050579170505841E08227887
chr157051131570511444E08233411
chr157051159470511913E08233690