| Sequence Name | Change(s) |
|---|---|
| GRCh38.p7 chr 15 | NC_000015.10:g.75123621A>G |
| GRCh37.p13 chr 15 | NC_000015.9:g.75415962A>G |
| Study | Population | Group | Sample # | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| 1000Genomes | African | Sub | 1322 | A=0.074 | G=0.926 |
| 1000Genomes | American | Sub | 694 | A=0.250 | G=0.750 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.202 | G=0.798 |
| 1000Genomes | Europe | Sub | 1006 | A=0.314 | G=0.686 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.208 | G=0.792 |
| 1000Genomes | South Asian | Sub | 978 | A=0.260 | G=0.740 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.272 | G=0.728 |
| The Genome Aggregation Database | African | Sub | 8720 | A=0.108 | G=0.892 |
| The Genome Aggregation Database | American | Sub | 838 | A=0.310 | G=0.690 |
| The Genome Aggregation Database | East Asian | Sub | 1614 | A=0.238 | G=0.762 |
| The Genome Aggregation Database | Europe | Sub | 18412 | A=0.322 | G=0.677 |
| The Genome Aggregation Database | Global | Study-wide | 29886 | A=0.253 | G=0.746 |
| The Genome Aggregation Database | Other | Sub | 302 | A=0.240 | G=0.760 |
| Trans-Omics for Precision Medicine | Global | Study-wide | 29118 | A=0.203 | G=0.796 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.279 | G=0.721 |
| PMID | Title | Author | Journal |
|---|---|---|---|
| 23089632 | A genome-wide association study of alcohol-dependence symptom counts in extended pedigrees identifies C15orf53. | Wang JC | Mol Psychiatry |
| SNP ID | p-value | Traits | Study |
|---|---|---|---|
| rs2029519 | 1.07E-05 | alcohol dependence | 23089632 |
| Position (v37) | eGene | GeneID | Variant | p-value | TSS | Tissue | |
|---|---|---|---|---|---|---|---|
| There is no eQTL annotation for this SNP | |||||||
| Probe ID | Position | Gene | beta | p-value | |||
|---|---|---|---|---|---|---|---|
| There is no meQTL annotation for this SNP | |||||||
There is no significant Hi-C chromatin interaction data for this SNP.
| Chromosome | Start | End | Region | Distance ( -/+ : Up/Downstream ) |
|---|---|---|---|---|
| chr15 | 75382011 | 75382398 | E068 | -33564 |
| chr15 | 75407287 | 75407428 | E068 | -8534 |
| chr15 | 75407287 | 75407428 | E069 | -8534 |
| chr15 | 75396988 | 75397911 | E071 | -18051 |
| chr15 | 75402531 | 75402680 | E071 | -13282 |
| chr15 | 75416563 | 75416758 | E071 | 601 |
| chr15 | 75407287 | 75407428 | E073 | -8534 |
| chr15 | 75407287 | 75407428 | E074 | -8534 |