rs2032793

Homo sapiens
G>A
LOC101929380 : Intron Variant
Check p-value
SNV (Single Nucleotide Variation)
A=0114 (3437/29960,GnomAD)
A=0078 (2298/29118,TOPMED)
A=0056 (279/5008,1000G)
A=0128 (495/3854,ALSPAC)
A=0131 (484/3708,TWINSUK)
chr5:87154488 (GRCh38.p7) (5q14.3)
AD
GWASdb2
1   publication(s)
See rs on genome
28 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 5NC_000005.10:g.87154488G>A
GRCh37.p13 chr 5NC_000005.9:g.86450305G>A

Gene: LOC101929380, uncharacterized LOC101929380(plus strand)

Molecule type Change Amino acid[Codon] SO Term
LOC101929380 transcriptNR_105018.1:n.N/AIntron Variant

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322G=0.972A=0.028
1000GenomesAmericanSub694G=0.950A=0.050
1000GenomesEast AsianSub1008G=0.937A=0.063
1000GenomesEuropeSub1006G=0.875A=0.125
1000GenomesGlobalStudy-wide5008G=0.944A=0.056
1000GenomesSouth AsianSub978G=0.980A=0.020
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854G=0.872A=0.128
The Genome Aggregation DatabaseAfricanSub8722G=0.958A=0.042
The Genome Aggregation DatabaseAmericanSub838G=0.930A=0.070
The Genome Aggregation DatabaseEast AsianSub1616G=0.923A=0.077
The Genome Aggregation DatabaseEuropeSub18482G=0.845A=0.154
The Genome Aggregation DatabaseGlobalStudy-wide29960G=0.885A=0.114
The Genome Aggregation DatabaseOtherSub302G=0.880A=0.120
Trans-Omics for Precision MedicineGlobalStudy-wide29118G=0.921A=0.078
UK 10K study - TwinsTWIN COHORTStudy-wide3708G=0.869A=0.131
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs20327937.9E-05alcoholism (heaviness of drinking)21529783

eQTL of rs2032793 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2032793 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr58643368186433759E067-16546
chr58643376586434291E067-16014
chr58643376586434291E069-16014
chr58643435986434607E069-15698
chr58648431486484519E07034009
chr58641606986417749E071-32556
chr58641904586419098E071-31207
chr58641917486419235E071-31070
chr58643206386432200E071-18105
chr58643311486433179E071-17126
chr58643322386433374E071-16931
chr58643368186433759E071-16546
chr58643376586434291E071-16014
chr58643435986434607E071-15698
chr58646673186466923E07116426
chr58648431486484519E07134009
chr58641606986417749E072-32556
chr58643206386432200E073-18105
chr58643368186433759E073-16546
chr58643376586434291E073-16014
chr58641606986417749E074-32556
chr58643206386432200E074-18105
chr58643368186433759E074-16546
chr58643376586434291E074-16014
chr58643435986434607E074-15698
chr58648431486484519E07434009
chr58648431486484519E08134009
chr58648431486484519E08234009