rs2033172

Homo sapiens
A>G
None
Check p-value
SNV (Single Nucleotide Variation)
A==0471 (14104/29900,GnomAD)
G=0465 (13555/29118,TOPMED)
G=0399 (1997/5008,1000G)
A==0268 (1032/3854,ALSPAC)
A==0285 (1057/3708,TWINSUK)
chr2:136482734 (GRCh38.p7) (2q22.1)
AD
GWASdb2
1   publication(s)
See rs on genome
19 Enhancers around
0 Promoter around

Genomic Coordinates

Sequence Name Change(s)
GRCh38.p7 chr 2NC_000002.12:g.136482734A>G
GRCh37.p13 chr 2NC_000002.11:g.137240304A>G

Population Frequency

Study Population Group Sample # Ref Allele Alt Allele
1000GenomesAfricanSub1322A=0.809G=0.191
1000GenomesAmericanSub694A=0.480G=0.520
1000GenomesEast AsianSub1008A=0.649G=0.351
1000GenomesEuropeSub1006A=0.368G=0.632
1000GenomesGlobalStudy-wide5008A=0.601G=0.399
1000GenomesSouth AsianSub978A=0.600G=0.400
The Avon Longitudinal Study of Parents and ChildrenPARENT AND CHILD COHORTStudy-wide3854A=0.268G=0.732
The Genome Aggregation DatabaseAfricanSub8698A=0.748G=0.252
The Genome Aggregation DatabaseAmericanSub836A=0.480G=0.520
The Genome Aggregation DatabaseEast AsianSub1610A=0.660G=0.340
The Genome Aggregation DatabaseEuropeSub18454A=0.322G=0.677
The Genome Aggregation DatabaseGlobalStudy-wide29900A=0.471G=0.528
The Genome Aggregation DatabaseOtherSub302A=0.580G=0.420
Trans-Omics for Precision MedicineGlobalStudy-wide29118A=0.534G=0.465
UK 10K study - TwinsTWIN COHORTStudy-wide3708A=0.285G=0.715
PMID Title Author Journal
21529783A quantitative-trait genome-wide association study of alcoholism risk in the community: findings and implications.Heath ACBiol Psychiatry

P-Value

SNP ID p-value Traits Study
rs20331726.2E-05alcoholism (heaviness of drinking)21529783

eQTL of rs2033172 in Brain tissues (GTEx Analysis Release V7)

Position (v37) eGene GeneID Variant p-value TSS Tissue
There is no eQTL annotation for this SNP

meQTL of rs2033172 in Fetal Brain

Probe ID Position Gene beta p-value
There is no meQTL annotation for this SNP

Genomic View

Chromatin Interaction

There is no significant Hi-C chromatin interaction data for this SNP.

Enhancer Annotation (GRCh37.p13)

Chromosome Start End Region Distance ( -/+ : Up/Downstream )
chr2137199698137199811E070-40493
chr2137200022137200210E070-40094
chr2137200546137200620E070-39684
chr2137254583137254828E07014279
chr2137255033137255103E07014729
chr2137255270137255637E07014966
chr2137255801137255851E07015497
chr2137255858137255960E07015554
chr2137199698137199811E071-40493
chr2137254583137254828E08114279
chr2137274685137275404E08134381
chr2137275565137275646E08135261
chr2137254583137254828E08214279
chr2137255033137255103E08214729
chr2137255270137255637E08214966
chr2137255801137255851E08215497
chr2137255858137255960E08215554
chr2137274685137275404E08234381
chr2137275565137275646E08235261